TreatCFM001522's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Base excision repair | 0.004248721 | KEGG pathway |
| DNA ligation involved in DNA repair | 0.005395957 | GO:0051103 |
| protein ADP-ribosylation | 0.005395957 | GO:0006471 |
| lagging strand elongation | 0.005395957 | GO:0006273 |
| anion transmembrane transport | 0.007584141 | GO:0098656 |
| DNA ligase (ATP) activity | 0.013934735 | GO:0003910 |
| inorganic phosphate transmembrane transporter activity | 0.013934735 | GO:0005315 |
| NAD+ ADP-ribosyltransferase activity | 0.013934735 | GO:0003950 |
| response to stimulus | 0.016552162 | GO:0050896 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010124 | AT5G62460 (8.00E-25) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T014000 | AT5G56550 (1.00E-08) | ATOXS3|OXIDATIVE STRESS 3 |
| CRO_T015601 | AT2G20670 (8.00E-65) | Protein of unknown function (DUF506) |
| CRO_T026972 | AT5G20380 (1.00E-175) | PHT4; 5|phosphate transporter 4; 5 |
| CRO_T031607 | AT5G56550 (6.00E-17) | ATOXS3|OXIDATIVE STRESS 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000052 | details | |
| TreatCFM000185 | auxin biosynthetic process negative regulation of ethylene biosynthetic process lagging strand elongation copper ion export DNA ligation involved in DNA repair response to water shade avoidance negative regulation of indoleacetic acid biosynthetic process via tryptophan copper ion transport protein ADP-ribosylation regulation of transcription, DNA-templated | details |
| TreatCFM001245 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process oxidoreductase activity, acting on a sulfur group of donors thymidylate kinase activity UDP-glycosyltransferase activity DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation uridylate kinase activity NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity Base excision repair Pyrimidine metabolism crocetin esters biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) transferase activity, transferring hexosyl groups triacylglycerol degradation Transcription_related, Transcription factor: C2H2 NAD binding single-organism metabolic process | details |
| TreatCFM001371 | mevalonate pathway I DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation regulation of intracellular pH ATP biosynthetic process DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity hydrogen-exporting ATPase activity, phosphorylative mechanism acetyl-CoA C-acetyltransferase activity Base excision repair protein catabolic process hydrogen ion transmembrane transport aspartic-type endopeptidase activity | details |
| TreatCFM001959 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polyprenyltransferase activity integral component of mitochondrial inner membrane Glycosaminoglycan degradation ubiquinone biosynthetic process isoprenoid biosynthetic process Ubiquinone and other terpenoid-quinone biosynthesis peptidase activity transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |