TreatCFM001373's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of apoptotic process | 0.006894174 | GO:0043066 |
| Apelin signaling pathway | 0.008050466 | KEGG pathway |
| Autophagy - yeast | 0.008050466 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.018571412 | kinase family |
| RNA processing | 0.047183652 | GO:0006396 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001409 | AT3G01090 (5.00E-159) | AKIN10|SNF1 kinase homolog 10; SNRK1.1|SNF1-RELATED PROTEIN KINASE 1.1 |
| CRO_T004352 | AT4G25515 (2.00E-116) | SLK3|SEUSS-like 3 |
| CRO_T009563 | AT1G73530 (9.00E-13) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T018063 | AT5G13660 (2.00E-04) | unknown protein |
| CRO_T024067 | AT3G17740 (0) | unknown protein |
| CRO_T030584 | AT4G00800 (1.00E-31) | SETH5|transducin family protein / WD-40 repeat family protein |
| CRO_T033822 | AT5G41970 (3.00E-147) | Metal-dependent protein hydrolase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000589 | Ubiquitin_Proteasome_system, E3: RING Transcription_related, Transcription regulator: Jumonji zinc ion binding | details |
| TreatCFM001167 | Autophagy - yeast Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family tau-protein kinase activity | details |
| TreatCFM001264 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity interstrand cross-link repair box C/D snoRNP complex U4/U6 x U5 tri-snRNP complex Fanconi anemia pathway precatalytic spliceosome maturation of SSU-rRNA maturation of LSU-rRNA zinc ion binding small-subunit processome nucleic acid phosphodiester bond hydrolysis RNA processing mRNA splicing, via spliceosome cytosolic large ribosomal subunit Spliceosome | details |
| TreatCFM001349 | interstrand cross-link repair Fanconi anemia pathway hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| TreatCFM001363 | Ubiquitin_Proteasome_system, E3 adaptor: DWD S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ethylene biosynthesis I (plants) anaphase-promoting complex binding methionine adenosyltransferase activity ubiquitin-protein transferase activator activity potassium ion transmembrane transporter activity NOD-like receptor signaling pathway oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | details |
| TreatCFM001727 | UMP biosynthesis I Wnt signaling pathway negative regulation of apoptotic process pyrimidine ribonucleotide biosynthetic process urea cycle aspartate carbamoyltransferase activity Apelin signaling pathway Pyrimidine metabolism 'de novo' pyrimidine nucleobase biosynthetic process histone acetylation cellular amino acid metabolic process Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: Jumonji Transcription_related, Transcription regulator: PHD transcription cofactor activity histone acetyltransferase activity | details |
| TreatCFM002103 | extended VTC2 cycle GDP-L-galactose biosynthesis VTC2 cycle L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism Autophagy - yeast Wnt signaling pathway GDP-mannose 3,5-epimerase activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase transcription cofactor activity histone acetyltransferase activity Transcription_related, Transcription regulator: PHD histone acetylation coenzyme binding Transcription_related, Transcription factor: FAR1 | details |
Expression profiles
 Show details about module gene expression profiling |