TreatCFM001389's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.003246271 | cazy family |
| Starch and sucrose metabolism | 0.004531211 | KEGG pathway |
| uracil degradation I (reductive) | 0.004873005 | plantCyc |
| starch biosynthesis | 0.010693724 | plantCyc |
| MicroRNAs in cancer | 0.011600278 | KEGG pathway |
| glucose-1-phosphate adenylyltransferase activity | 0.019033317 | GO:0008878 |
| beta-ureidopropionase activity | 0.019033317 | GO:0003837 |
| Pyrimidine metabolism | 0.020753479 | KEGG pathway |
| uracil catabolic process | 0.028258325 | GO:0006212 |
| trehalose biosynthetic process | 0.031724934 | GO:0005992 |
| starch biosynthetic process | 0.031724934 | GO:0019252 |
| glycogen biosynthetic process | 0.031724934 | GO:0005978 |
| cell wall | 0.034899381 | GO:0005618 |
| ribonuclease III activity | 0.041184056 | GO:0004525 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.04362608 | GO:0090502 |
| spindle | 0.045452098 | GO:0005819 |
| phragmoplast | 0.049532864 | GO:0009524 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000548 | AT1G17810 (2.00E-46) | BETA-TIP|beta-tonoplast intrinsic protein |
| CRO_T001063 | AT3G14240 (0) | Subtilase family protein |
| CRO_T005029 | AT5G20320 (0) | ATDCL4|DICER-LIKE 4 |
| CRO_T008198 | AT1G18900 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T008937 | AT1G80130 (8.00E-35) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T009228 | AT2G27450 (9.00E-20) | NLP1|nitrilase-like protein 1 |
| CRO_T011965 | AT2G24940 (1.00E-13) | AtMAPR2|membrane-associated progesterone binding protein 2 |
| CRO_T015336 | AT1G24150 (4.00E-55) | ATFH4|FORMIN HOMOLOGUE 4 |
| CRO_T021546 | AT1G06410 (0) | ATTPS7|trehalose-phosphatase/synthase 7; TPS7|TREHALOSE -6-PHOSPHATASE SYNTHASE S7 |
| CRO_T029567 | AT1G27680 (0) | APL2|ADPGLC-PPase large subunit |
| CRO_T030414 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000086 | Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII γ-linolenate biosynthesis I (plants) arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) uracil degradation I (reductive) Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Pyrimidine metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-ureidopropionase activity metallochaperone activity protein phosphorylation uracil catabolic process | details |
| TreatCFM000856 | Transcription_related, Transcription factor: MIKC small ribosomal subunit rRNA binding phragmoplast spindle | details |
| TreatCFM001197 | uracil degradation I (reductive) Starch and sucrose metabolism chloroplast isoamylase complex MicroRNAs in cancer adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-ureidopropionase activity isoamylase activity cytoskeleton-dependent intracellular transport protein localization amylopectin biosynthetic process uracil catabolic process glycogen metabolic process Pyrimidine metabolism trehalose biosynthetic process ribonuclease III activity ATP-dependent microtubule motor activity, plus-end-directed Ubiquitin_Proteasome_system, E3 adaptor: BTB RNA phosphodiester bond hydrolysis, endonucleolytic kinesin complex protein catabolic process microtubule | details |
| TreatCFM001341 | salicylate glucosides biosynthesis II salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis Starch and sucrose metabolism sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity spindle phragmoplast quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001497 | formation of glycosidic bonds, GlycosylTransferases: GTnc rRNA primary transcript binding maturation of LSU-rRNA maturation of 5.8S rRNA trehalose biosynthetic process Phenylpropanoid biosynthesis Starch and sucrose metabolism carbohydrate transport protein catabolic process ribosomal large subunit assembly proton transport hydrogen peroxide catabolic process | details |
| TreatCFM001749 | uracil degradation I (reductive) homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family beta-ureidopropionase activity sphingomyelin phosphodiesterase activity uracil catabolic process detection of brassinosteroid stimulus root hair cell differentiation positive regulation of protein export from nucleus polysaccharide biosynthetic process Pyrimidine metabolism Ras signaling pathway formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination brassinosteroid mediated signaling pathway translation release factor activity, codon specific multidimensional cell growth leaf morphogenesis ribosome binding protein autophosphorylation response to auxin small GTPase mediated signal transduction | details |
| TreatCFM001762 | salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity Starch and sucrose metabolism S-adenosylmethionine-dependent methyltransferase activity spindle phragmoplast | details |
| TreatCFM001775 | Cytochrome_P450, Cytochrome P450: CYP716A Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II betulinate biosynthesis oleanolate biosynthesis ursolate biosynthesis MicroRNAs in cancer Transcription_related, Transcription factor: C2H2 D-arabinono-1,4-lactone oxidase activity L-gulonolactone oxidase activity ribonuclease III activity | details |
| TreatCFM001856 | uracil degradation I (reductive) N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity beta-ureidopropionase activity Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Transcription_related, Transcription factor: ARF lysophospholipase activity palmitoyl-(protein) hydrolase activity uracil catabolic process protein depalmitoylation Other glycan degradation response to hormone Glycerophospholipid metabolism NF-kappa B signaling pathway Pyrimidine metabolism single-organism cellular process regulation of cellular process | details |
| TreatCFM002048 | formation of glycosidic bonds, GlycosylTransferases: GTnc chlorophyll a degradation II uracil degradation I (reductive) cytosol red chlorophyll catabolite reductase activity beta-ureidopropionase activity glycogen phosphorylase activity rRNA (uridine-N3-)-methyltransferase activity glycogen catabolic process regulation of plant-type hypersensitive response uracil catabolic process defense response, incompatible interaction cellular response to gravity tubulin complex chloroplast stroma response to cadmium ion rRNA base methylation chlorophyll catabolic process microtubule-based process Phagosome structural constituent of cytoskeleton Porphyrin and chlorophyll metabolism Pyrimidine metabolism amyloplast protein catabolic process response to water deprivation identical protein binding aspartic-type endopeptidase activity Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |