TreatCFM001762's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| salvigenin biosynthesis | 0.002686583 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.004130641 | cazy family |
| sucrose metabolic process | 0.013640786 | GO:0005985 |
| aromatic compound biosynthetic process | 0.014759188 | GO:0019438 |
| sucrose synthase activity | 0.020645881 | GO:0016157 |
| O-methyltransferase activity | 0.020645881 | GO:0008171 |
| Starch and sucrose metabolism | 0.026993026 | KEGG pathway |
| S-adenosylmethionine-dependent methyltransferase activity | 0.036005617 | GO:0008757 |
| spindle | 0.040422535 | GO:0005819 |
| phragmoplast | 0.040422535 | GO:0009524 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001880 | AT1G10750 (0) | Protein of Unknown Function (DUF239) |
| CRO_T004136 | AT1G21100 (6.00E-22) | IGMT1|indole glucosinolate O-methyltransferase 1 |
| CRO_T005709 | AT2G40660 (9.00E-102) | Nucleic acid-binding, OB-fold-like protein |
| CRO_T009087 | AT1G10540 (0) | NAT8|nucleobase-ascorbate transporter 8 |
| CRO_T015336 | AT1G24150 (4.00E-55) | ATFH4|FORMIN HOMOLOGUE 4 |
| CRO_T016709 | AT1G73370 (0) | ATSUS6|SUCROSE SYNTHASE 6 |
| CRO_T031744 | AT3G51970 (8.00E-67) | ASAT1|acyl-CoA sterol acyl transferase 1; ATSAT1|STEROL O-ACYLTRANSFERASE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000800 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport sucrose synthase activity sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof Ribosome biogenesis in eukaryotes Starch and sucrose metabolism | details |
| TreatCFM000856 | Transcription_related, Transcription factor: MIKC small ribosomal subunit rRNA binding phragmoplast spindle | details |
| TreatCFM001281 | Transcription_related, Transcription factor: BBR-BPC pyrimidine nucleotide metabolic process dCMP deaminase activity polysaccharide biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc homogalacturonan biosynthesis Phenylpropanoid biosynthesis plant-type cell wall organization | details |
| TreatCFM001302 | 1,3-β-D-glucan biosynthesis purine nucleobase transmembrane transport sucrose metabolic process (1->3)-beta-D-glucan biosynthetic process purine nucleobase transmembrane transporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism 1,3-beta-D-glucan synthase activity sucrose synthase activity RNA secondary structure unwinding 1,3-beta-D-glucan synthase complex Transcription_related, Transcription factor: HB flavonoid glucuronidation flavonoid biosynthetic process | details |
| TreatCFM001341 | salicylate glucosides biosynthesis II salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis Starch and sucrose metabolism sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity spindle phragmoplast quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001389 | formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism uracil degradation I (reductive) starch biosynthesis MicroRNAs in cancer glucose-1-phosphate adenylyltransferase activity beta-ureidopropionase activity Pyrimidine metabolism uracil catabolic process trehalose biosynthetic process starch biosynthetic process glycogen biosynthetic process cell wall ribonuclease III activity RNA phosphodiester bond hydrolysis, endonucleolytic spindle phragmoplast | details |
Expression profiles
 Show details about module gene expression profiling |