TreatCFM001197's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| uracil degradation I (reductive) | 0.001476799 | plantCyc |
| Starch and sucrose metabolism | 0.003717142 | KEGG pathway |
| chloroplast isoamylase complex | 0.004924628 | GO:0010368 |
| MicroRNAs in cancer | 0.010547888 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.012290307 | cazy family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.012290307 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.012290307 | cazy family |
| beta-ureidopropionase activity | 0.012979946 | GO:0003837 |
| isoamylase activity | 0.012979946 | GO:0019156 |
| cytoskeleton-dependent intracellular transport | 0.014715226 | GO:0030705 |
| protein localization | 0.014715226 | GO:0008104 |
| amylopectin biosynthetic process | 0.014715226 | GO:0010021 |
| uracil catabolic process | 0.014715226 | GO:0006212 |
| glycogen metabolic process | 0.015692067 | GO:0005977 |
| Pyrimidine metabolism | 0.018876825 | KEGG pathway |
| trehalose biosynthetic process | 0.022866016 | GO:0005992 |
| ribonuclease III activity | 0.028085845 | GO:0004525 |
| ATP-dependent microtubule motor activity, plus-end-directed | 0.028085845 | GO:0008574 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.035438819 | ubs family |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.043300805 | GO:0090502 |
| kinesin complex | 0.044121779 | GO:0005871 |
| protein catabolic process | 0.045185363 | GO:0030163 |
| microtubule | 0.048060061 | GO:0005874 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005029 | AT5G20320 (0) | ATDCL4|DICER-LIKE 4 |
| CRO_T006610 | AT3G08570 (0) | Phototropic-responsive NPH3 family protein |
| CRO_T008198 | AT1G18900 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T009228 | AT2G27450 (9.00E-20) | NLP1|nitrilase-like protein 1 |
| CRO_T010260 | AT5G22850 (4.00E-25) | Eukaryotic aspartyl protease family protein |
| CRO_T011130 | AT1G54460 (2.00E-32) | TPX2 (targeting protein for Xklp2) protein family |
| CRO_T020906 | AT4G10790 (2.00E-56) | UBX domain-containing protein |
| CRO_T021546 | AT1G06410 (0) | ATTPS7|trehalose-phosphatase/synthase 7; TPS7|TREHALOSE -6-PHOSPHATASE SYNTHASE S7 |
| CRO_T027182 | AT1G01950 (0) | ARK2|armadillo repeat kinesin 2; AtKINUb|KINESIN Ungrouped clade, gene B |
| CRO_T030178 | AT1G03310 (5.00E-21) | ATISA2|ISOAMYLASE 2; BE2|BRANCHING ENZYME 2; DBE1|debranching enzyme 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000086 | Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII γ-linolenate biosynthesis I (plants) arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) uracil degradation I (reductive) Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Pyrimidine metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-ureidopropionase activity metallochaperone activity protein phosphorylation uracil catabolic process | details |
| TreatCFM000652 | glyoxylate cycle cilium morphogenesis intraciliary retrograde transport cellular glucose homeostasis coenzyme A transmembrane transport glucose 6-phosphate metabolic process intraciliary transport particle A mannokinase activity glucokinase activity glucose binding glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity coenzyme A transmembrane transporter activity protein localization to cilium fructokinase activity carbohydrate phosphorylation cilium chloroplast outer membrane glycolytic process cytosol | details |
| TreatCFM001389 | formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism uracil degradation I (reductive) starch biosynthesis MicroRNAs in cancer glucose-1-phosphate adenylyltransferase activity beta-ureidopropionase activity Pyrimidine metabolism uracil catabolic process trehalose biosynthetic process starch biosynthetic process glycogen biosynthetic process cell wall ribonuclease III activity RNA phosphodiester bond hydrolysis, endonucleolytic spindle phragmoplast | details |
| TreatCFM001497 | formation of glycosidic bonds, GlycosylTransferases: GTnc rRNA primary transcript binding maturation of LSU-rRNA maturation of 5.8S rRNA trehalose biosynthetic process Phenylpropanoid biosynthesis Starch and sucrose metabolism carbohydrate transport protein catabolic process ribosomal large subunit assembly proton transport hydrogen peroxide catabolic process | details |
| TreatCFM001749 | uracil degradation I (reductive) homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family beta-ureidopropionase activity sphingomyelin phosphodiesterase activity uracil catabolic process detection of brassinosteroid stimulus root hair cell differentiation positive regulation of protein export from nucleus polysaccharide biosynthetic process Pyrimidine metabolism Ras signaling pathway formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination brassinosteroid mediated signaling pathway translation release factor activity, codon specific multidimensional cell growth leaf morphogenesis ribosome binding protein autophosphorylation response to auxin small GTPase mediated signal transduction | details |
| TreatCFM001775 | Cytochrome_P450, Cytochrome P450: CYP716A Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II betulinate biosynthesis oleanolate biosynthesis ursolate biosynthesis MicroRNAs in cancer Transcription_related, Transcription factor: C2H2 D-arabinono-1,4-lactone oxidase activity L-gulonolactone oxidase activity ribonuclease III activity | details |
| TreatCFM001856 | uracil degradation I (reductive) N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity beta-ureidopropionase activity Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Transcription_related, Transcription factor: ARF lysophospholipase activity palmitoyl-(protein) hydrolase activity uracil catabolic process protein depalmitoylation Other glycan degradation response to hormone Glycerophospholipid metabolism NF-kappa B signaling pathway Pyrimidine metabolism single-organism cellular process regulation of cellular process | details |
| TreatCFM001982 | starch biosynthesis chloroplast isoamylase complex amylopectin biosynthetic process response to molecule of bacterial origin root morphogenesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V isoamylase activity glycogen metabolic process Arp2/3 complex-mediated actin nucleation ATP binding activation of MAPKK activity multidimensional cell growth trichome morphogenesis Autophagy - yeast Arp2/3 protein complex MAP kinase kinase kinase activity MAPK cascade microtubule-based movement microtubule binding ATPase activity microtubule motor activity Starch and sucrose metabolism kinesin complex microtubule | details |
| TreatCFM002048 | formation of glycosidic bonds, GlycosylTransferases: GTnc chlorophyll a degradation II uracil degradation I (reductive) cytosol red chlorophyll catabolite reductase activity beta-ureidopropionase activity glycogen phosphorylase activity rRNA (uridine-N3-)-methyltransferase activity glycogen catabolic process regulation of plant-type hypersensitive response uracil catabolic process defense response, incompatible interaction cellular response to gravity tubulin complex chloroplast stroma response to cadmium ion rRNA base methylation chlorophyll catabolic process microtubule-based process Phagosome structural constituent of cytoskeleton Porphyrin and chlorophyll metabolism Pyrimidine metabolism amyloplast protein catabolic process response to water deprivation identical protein binding aspartic-type endopeptidase activity Starch and sucrose metabolism | details |
| TreatCFM002132 | xylulokinase activity xylulose metabolic process external side of plasma membrane carbohydrate phosphorylation multidimensional cell growth response to salt stress Pentose and glucuronate interconversions | details |
Expression profiles
 Show details about module gene expression profiling |