TreatCFM001398's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: C2C2-LSD | 0.000531915 | TF family |
| mitochondrial inner membrane peptidase complex | 0.004875166 | GO:0042720 |
| geranyl acetate biosynthesis | 0.004875166 | plantCyc |
| protein processing involved in protein targeting to mitochondrion | 0.006769966 | GO:0006627 |
| negative regulation of plant-type hypersensitive response | 0.006769966 | GO:0034051 |
| regulation of cell differentiation | 0.006769966 | GO:0045595 |
| mitochondrial respiratory chain complex assembly | 0.006769966 | GO:0033108 |
| plant-type hypersensitive response | 0.008271346 | GO:0009626 |
| thylakoid membrane organization | 0.008271346 | GO:0010027 |
| signal peptide processing | 0.008377528 | GO:0006465 |
| Protein export | 0.008482389 | KEGG pathway |
| ajmaline and sarpagine biosynthesis | 0.010379627 | plantCyc |
| volatile benzenoid biosynthesis I (ester formation) | 0.010379627 | plantCyc |
| cell differentiation | 0.010708821 | GO:0030154 |
| nucleic acid phosphodiester bond hydrolysis | 0.029968933 | GO:0090305 |
| endonuclease activity | 0.036878537 | GO:0004519 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003654 | AT5G23970 (3.00E-53) | HXXXD-type acyl-transferase family protein |
| CRO_T016663 | AT2G45380 (1.00E-26) | unknown protein |
| CRO_T017199 | AT1G32540 (5.00E-47) | LOL1|lsd one like 1 |
| CRO_T019476 | AT1G47310 (1.00E-65) | unknown protein |
| CRO_T025180 | AT1G67660 (2.00E-93) | Restriction endonuclease, type II-like superfamily protein |
| CRO_T027844 | AT3G45750 (2.00E-11) | Nucleotidyltransferase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000081 | autophagosome endosome membrane response to starvation activation of GTPase activity autophagy regulation of vesicle fusion endonuclease activity Rab GTPase binding GTPase activator activity metalloendopeptidase activity nucleic acid phosphodiester bond hydrolysis | details |
| TreatCFM000104 | integral component of mitochondrial outer membrane nucleolar ribonuclease P complex auxin catabolic process | details |
| TreatCFM000150 | peptidase activity | details |
| TreatCFM000731 | PI3K-Akt signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001030 | Cytochrome_P450, Cytochrome P450: CYP734A Transcription_related, Transcription factor: C2C2-LSD regulation of cell differentiation negative regulation of plant-type hypersensitive response plant-type hypersensitive response cell differentiation brassinosteroids inactivation secologanin and strictosidine biosynthesis nucleic acid phosphodiester bond hydrolysis endonuclease activity | details |
| TreatCFM002008 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: TUB Transcription_related, Transcription regulator: SWI/SNF-BAF60b cilium mitochondrial inner membrane peptidase complex removal of superoxide radicals thylakoid membrane organization mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion signal peptide processing protein localization to cilium Protein export phosphatidylinositol binding superoxide dismutase activity mitochondrial matrix serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |