TreatCFM000150's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| peptidase activity | 0.029836765 | GO:0008233 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000190 | - | - |
| CRO_T002093 | - | - |
| CRO_T004360 | - | - |
| CRO_T006558 | AT1G69690 (7.00E-33) | TCP15|TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 |
| CRO_T010007 | AT2G24765 (3.00E-36) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
| CRO_T010098 | - | - |
| CRO_T010573 | - | - |
| CRO_T013742 | AT3G48880 (2.00E-13) | RNI-like superfamily protein |
| CRO_T016048 | - | - |
| CRO_T023251 | - | - |
| CRO_T023469 | AT5G58890 (4.00E-19) | AGL82|AGAMOUS-like 82 |
| CRO_T027002 | AT4G10250 (7.00E-24) | ATHSP22.0|HSP20-like chaperones superfamily protein |
| CRO_T027749 | - | - |
| CRO_T027844 | AT3G45750 (2.00E-11) | Nucleotidyltransferase family protein |
| CRO_T029039 | - | - |
| CRO_T032937 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000050 | details | |
| TreatCFM000104 | integral component of mitochondrial outer membrane nucleolar ribonuclease P complex auxin catabolic process | details |
| TreatCFM000179 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) cyclin-dependent protein serine/threonine kinase activity regulation of cell cycle | details |
| TreatCFM000305 | details | |
| TreatCFM000488 | Ribosome biogenesis in eukaryotes CURI complex UTP-C complex maturation of SSU-rRNA ribosomal small subunit assembly rRNA processing Transcription_related, Transcription factor: HSF Transcription_related, Transcription factor: TCP transferase activity, transferring acyl groups small-subunit processome | details |
| TreatCFM000508 | flavonoid metabolic process UDP-glucosyltransferase activity | details |
| TreatCFM000526 | Cytochrome_P450, Cytochrome P450: CYP78A | details |
| TreatCFM000635 | DNA mediated transformation Viral carcinogenesis | details |
| TreatCFM000659 | Transcription_related, Transcription regulator: ARID | details |
| TreatCFM000716 | CURI complex UTP-C complex Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) Transcription_related, Transcription factor: ARR-B transcription factor activity, sequence-specific DNA binding cyclin-dependent protein serine/threonine kinase activity transcription, DNA-templated positive regulation of anthocyanin metabolic process gibberellic acid mediated signaling pathway regulation of photomorphogenesis positive regulation of circadian rhythm regulation of cell cycle red, far-red light phototransduction Transcription_related, Transcription factor: bZIP response to UV-B ribosomal small subunit assembly regulation of transcription, DNA-templated Circadian rhythm - plant double-stranded DNA binding phosphorelay signal transduction system rRNA processing nucleus response to abscisic acid Ribosome biogenesis in eukaryotes | details |
| TreatCFM000731 | PI3K-Akt signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000863 | mRNA surveillance pathway | details |
| TreatCFM000973 | Transcription_related, Transcription factor: B3 mRNA surveillance pathway | details |
| TreatCFM001030 | Cytochrome_P450, Cytochrome P450: CYP734A Transcription_related, Transcription factor: C2C2-LSD regulation of cell differentiation negative regulation of plant-type hypersensitive response plant-type hypersensitive response cell differentiation brassinosteroids inactivation secologanin and strictosidine biosynthesis nucleic acid phosphodiester bond hydrolysis endonuclease activity | details |
| TreatCFM001398 | Transcription_related, Transcription factor: C2C2-LSD mitochondrial inner membrane peptidase complex geranyl acetate biosynthesis protein processing involved in protein targeting to mitochondrion negative regulation of plant-type hypersensitive response regulation of cell differentiation mitochondrial respiratory chain complex assembly plant-type hypersensitive response thylakoid membrane organization signal peptide processing Protein export ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) cell differentiation nucleic acid phosphodiester bond hydrolysis endonuclease activity | details |
| TreatCFM001409 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM001482 | Transcription_related, Transcription factor: Alfin-like mevalonate pathway I pyridoxal 5'-phosphate salvage I FAD diphosphatase activity pyridoxal kinase activity mevalonate kinase activity flavin-containing compound metabolic process peptidyl-cysteine oxidation anaerobic respiration pyridoxal 5'-phosphate salvage detection of hypoxia Taurine and hypotaurine metabolism Vitamin B6 metabolism phosphorylation zinc ion binding isoprenoid biosynthetic process | details |
| TreatCFM001592 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II blue light photoreceptor activity mevalonate kinase activity blue light signaling pathway entrainment of circadian clock shade avoidance positive regulation of abscisic acid-activated signaling pathway regulation of stomatal closure anthocyanin-containing compound metabolic process programmed cell death phosphatidic acid metabolic process choline biosynthesis III mevalonate pathway I photoperiodism, flowering phospholipase D activity regulation of stomatal movement nucleoside metabolic process nuclear body Transcription_related, Transcription factor: G2-like phosphatidate metabolism, as a signaling molecule positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis response to cold isoprenoid biosynthetic process phospholipases Circadian rhythm - plant Cysteine and methionine metabolism Glycerophospholipid metabolism Terpenoid backbone biosynthesis response to water deprivation Ubiquitin mediated proteolysis identical protein binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |