TreatCFM001572's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 0.001772133 | kinase family |
| carbamoyl-phosphate synthase complex | 0.004048762 | GO:0005951 |
| glucokinase activity | 0.005781393 | GO:0004340 |
| glucose binding | 0.005781393 | GO:0005536 |
| mannokinase activity | 0.005781393 | GO:0019158 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 0.005781393 | GO:0004088 |
| L-arginine biosynthesis I (via L-ornithine) | 0.006947787 | plantCyc |
| UMP biosynthesis I | 0.006947787 | plantCyc |
| urea cycle | 0.006947787 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 0.007291943 | plantCyc |
| ornithine-citrulline shuttle | 0.007291943 | plantCyc |
| L-glutamine degradation I | 0.007377116 | plantCyc |
| fructokinase activity | 0.009246129 | GO:0008865 |
| glucose 6-phosphate metabolic process | 0.013202225 | GO:0051156 |
| cellular glucose homeostasis | 0.013202225 | GO:0001678 |
| glutamine metabolic process | 0.014839339 | GO:0006541 |
| 'de novo' pyrimidine nucleobase biosynthetic process | 0.014839339 | GO:0006207 |
| arginine biosynthetic process | 0.014839339 | GO:0006526 |
| regulation of cell shape | 0.014839339 | GO:0008360 |
| Wnt signaling pathway | 0.014839339 | KEGG pathway |
| carbohydrate phosphorylation | 0.015385534 | GO:0046835 |
| Endocytosis | 0.015821613 | KEGG pathway |
| Pyrimidine metabolism | 0.018573055 | KEGG pathway |
| glycolytic process | 0.022152943 | GO:0006096 |
| peptidyl-serine phosphorylation | 0.029053848 | GO:0018105 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002312 | AT5G25070 (2.00E-96) | unknown protein |
| CRO_T004641 | AT2G25760 (0) | Protein kinase family protein |
| CRO_T009633 | AT3G11210 (4.00E-83) | SGNH hydrolase-type esterase superfamily protein |
| CRO_T011462 | AT2G19860 (9.00E-137) | ATHXK2|HEXOKINASE 2 |
| CRO_T015106 | AT1G24909 (7.00E-11) | Glutamine amidotransferase type 1 family protein |
| CRO_T033761 | AT5G60570 (2.00E-161) | Galactose oxidase/kelch repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000194 | carbamoyl-phosphate synthase complex L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational termination positive regulation of translational elongation translational frameshifting ion binding glucuronosyltransferase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity histidine phosphotransfer kinase activity xylem development xylan biosynthetic process cytokinin-activated signaling pathway protein histidine kinase binding 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process plant-type secondary cell wall biogenesis glutamine metabolic process Pyrimidine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ribosome binding Transcription_related, Transcription factor: ERF translation elongation factor activity phosphorelay signal transduction system translational initiation Plant hormone signal transduction | details |
| TreatCFM001147 | carbamoyl-phosphate synthase complex chloroplast stroma L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I cytokinin metabolic process 'de novo' pyrimidine nucleobase biosynthetic process plastid organization translational termination peptidyl-tyrosine dephosphorylation glutamine metabolic process arginine biosynthetic process carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity cytokinin dehydrogenase activity translation release factor activity, codon specific Inositol phosphate metabolism Pyrimidine metabolism Zeatin biosynthesis ribosome binding protein tyrosine phosphatase activity oxidoreductase activity, acting on CH-OH group of donors RNA processing | details |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001251 | Ubiquitin_Proteasome_system, DUB: OTU glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle carbamoyl-phosphate synthase complex L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I positive regulation of translational elongation translational frameshifting positive regulation of translational termination pyridoxal phosphate biosynthetic process glycerol-3-phosphate catabolic process cell morphogenesis carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity ion binding glycerol-3-phosphate dehydrogenase [NAD+] activity pyridoxamine-phosphate oxidase activity 'de novo' pyrimidine nucleobase biosynthetic process glycerol-3-phosphate dehydrogenase complex glutamine metabolic process arginine biosynthetic process Glycerophospholipid metabolism Pyrimidine metabolism ribosome binding FMN binding translation elongation factor activity translational initiation | details |
| TreatCFM001516 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase translational frameshifting positive regulation of translational termination positive regulation of translational elongation carbamoyl-phosphate synthase complex Pyrimidine metabolism cytochrome b6f complex assembly urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase 'de novo' pyrimidine nucleobase biosynthetic process protein serine/threonine/tyrosine kinase activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity arginine biosynthetic process protein phosphorylation glutamine metabolic process protein serine/threonine kinase activity ribosome binding translation elongation factor activity translational initiation translation initiation factor activity | details |
| TreatCFM001537 | nuclear part Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) intracellular ribonucleoprotein complex RNA secondary structure unwinding RNA processing Transcription_related, Transcription factor: NAC | details |
| TreatCFM001587 | carbamoyl-phosphate synthase complex glycerol-3-phosphate shuttle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle glycerol-3-phosphate catabolic process translational frameshifting positive regulation of translational termination cytochrome b6f complex assembly positive regulation of translational elongation L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase glycerol-3-phosphate dehydrogenase complex 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process glutamine metabolic process Glycerophospholipid metabolism Pyrimidine metabolism carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity glycerol-3-phosphate dehydrogenase [NAD+] activity translational initiation ribosome binding translation elongation factor activity | details |
| TreatCFM001928 | Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase complex Pyrimidine metabolism L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I glutamine metabolic process arginine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |