TreatCFM001610's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Galactose metabolism | 4.40E-05 | KEGG pathway |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.001240768 | cazy family |
| UDP-D-galactose biosynthesis | 0.008096328 | plantCyc |
| D-galactose degradation III | 0.010115924 | plantCyc |
| stachyose degradation | 0.011117655 | plantCyc |
| UDP-sugars interconversion | 0.011117655 | plantCyc |
| sinapyl alcohol dehydrogenase activity | 0.013934735 | GO:0052747 |
| UDP-glucose 4-epimerase activity | 0.013934735 | GO:0003978 |
| cinnamyl-alcohol dehydrogenase activity | 0.013934735 | GO:0045551 |
| galactose metabolic process | 0.017718709 | GO:0006012 |
| secologanin and strictosidine biosynthesis | 0.021377737 | plantCyc |
| Phenylpropanoid biosynthesis | 0.036859141 | KEGG pathway |
| antiporter activity | 0.041643913 | GO:0015297 |
| drug transmembrane transporter activity | 0.041643913 | GO:0015238 |
| drug transmembrane transport | 0.049995737 | GO:0006855 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012270 | AT1G71870 (2.00E-135) | MATE efflux family protein |
| CRO_T016057 | AT1G10660 (6.00E-14) | unknown protein |
| CRO_T020329 | AT3G13790 (0) | ATCWINV1|CELL WALL INVERTASE 1 |
| CRO_T023188 | AT4G10960 (2.00E-162) | UGE5|UDP-D-glucose/UDP-D-galactose 4-epimerase 5 |
| CRO_T025273 | AT5G03670 (8.00E-56) | TRM28|TON1 Recruiting Motif 28 |
| CRO_T025489 | AT4G37990 (2.00E-104) | ATCAD8|CINNAMYL-ALCOHOL DEHYDROGENASE 8; CAD-B2|CINNAMYL-ALCOHOL DEHYDROGENASE B2; ELI3|ELICITOR-ACTIVATED GENE 3; ELI3-2|elicitor-activated gene 3-2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000687 | bisbenzylisoquinoline alkaloid biosynthesis magnoflorine biosynthesis nuclear outer membrane-endoplasmic reticulum membrane network AP-3 adaptor complex detoxification of copper ion copper ion export hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM000866 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity suberin biosynthetic process macromolecule depalmitoylation biological regulation | details |
| TreatCFM001356 | xylogalacturonan biosynthesis actin cytoskeleton organization Galactose metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SWI/SNF-BAF60b formation of glycosidic bonds, GlycosylTransferases: GTnc cytoskeleton structural constituent of cytoskeleton | details |
| TreatCFM001603 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase secologanin and strictosidine biosynthesis receptor-mediated endocytosis scavenger receptor activity protein tyrosine kinase activity sinapyl alcohol dehydrogenase activity abscisic acid binding cinnamyl-alcohol dehydrogenase activity transmembrane transporter activity Galactose metabolism | details |
| TreatCFM001701 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SWI/SNF-BAF60b Fructose and mannose metabolism Galactose metabolism mannan catabolic process translational initiation ribosome binding mannan endo-1,4-beta-mannosidase activity translation elongation factor activity protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TreatCFM001848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoplasmic microtubule organization Galactose metabolism Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001853 | pyruvate decarboxylation to acetyl CoA Ubiquitin_Proteasome_system, E3 adaptor: DWD drug transmembrane transporter activity protein binding transferase activity, transferring acyl groups antiporter activity biological regulation | details |
Expression profiles
 Show details about module gene expression profiling |