TreatCFM001853's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyruvate decarboxylation to acetyl CoA | 0.002657217 | plantCyc |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| drug transmembrane transporter activity | 0.04409624 | GO:0015238 |
| protein binding | 0.04409624 | GO:0005515 |
| transferase activity, transferring acyl groups | 0.04409624 | GO:0016746 |
| antiporter activity | 0.04409624 | GO:0015297 |
| biological regulation | 0.048228493 | GO:0065007 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012270 | AT1G71870 (2.00E-135) | MATE efflux family protein |
| CRO_T012742 | AT1G54220 (3.00E-30) | Dihydrolipoamide acetyltransferase, long form protein |
| CRO_T013427 | AT5G05570 (0) | transducin family protein / WD-40 repeat family protein |
| CRO_T018059 | AT2G32060 (9.00E-44) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T022910 | AT2G30880 (8.00E-124) | AtSWAP70; SWAP70|Pleckstrin homology (PH) domain-containing protein |
| CRO_T025509 | AT5G20130 (4.00E-32) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000136 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity macromolecule depalmitoylation regulation of vesicle fusion biological regulation activation of GTPase activity Rab GTPase binding GTPase activator activity RNA secondary structure unwinding Fatty acid metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD fatty acid biosynthetic process | details |
| TreatCFM000152 | baicalein degradation (hydrogen peroxide detoxification) wogonin metabolism Glycosaminoglycan degradation Vasopressin-regulated water reabsorption negative regulation of post-embryonic development negative regulation of reproductive process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc calcium-dependent cysteine-type endopeptidase activity Rho GDP-dissociation inhibitor activity benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: MIKC Plant-pathogen interaction Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM000198 | epidermis development serine-type carboxypeptidase activity | details |
| TreatCFM000866 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity suberin biosynthetic process macromolecule depalmitoylation biological regulation | details |
| TreatCFM001001 | vacuolar acidification D-myo-inositol-5-phosphate metabolism Transcription_related, Transcription factor: ARF Oxidative phosphorylation proanthocyanidin biosynthetic process Inositol phosphate metabolism vacuole organization seed coat development vacuolar proton-transporting V-type ATPase complex assembly hydrogen-exporting ATPase activity, phosphorylative mechanism ATPase binding ATP biosynthetic process peptidyl-tyrosine dephosphorylation vacuolar proton-transporting V-type ATPase, V0 domain plant-type vacuole protein tyrosine phosphatase activity proton-transporting ATPase activity, rotational mechanism cysteine-type endopeptidase activity ATP hydrolysis coupled proton transport | details |
| TreatCFM001276 | polyamine catabolic process polyamine oxidase activity spermine and spermidine degradation III Arginine and proline metabolism flavin adenine dinucleotide binding peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001347 | nuclear ubiquitin ligase complex Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) positive regulation of translational elongation organ senescence detection of nutrient vegetative phase change translational frameshifting positive regulation of translational termination developmental process involved in reproduction sugar mediated signaling pathway primary root development Apelin signaling pathway RNA degradation abscisic acid-activated signaling pathway translational initiation | details |
| TreatCFM001486 | integral component of chloroplast outer membrane cation transport RNA secondary structure unwinding ER to Golgi vesicle-mediated transport ion transmembrane transport ion channel activity chloroplast inner membrane | details |
| TreatCFM001610 | Galactose metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc UDP-D-galactose biosynthesis D-galactose degradation III stachyose degradation UDP-sugars interconversion sinapyl alcohol dehydrogenase activity UDP-glucose 4-epimerase activity cinnamyl-alcohol dehydrogenase activity galactose metabolic process secologanin and strictosidine biosynthesis Phenylpropanoid biosynthesis antiporter activity drug transmembrane transporter activity drug transmembrane transport | details |
| TreatCFM001857 | D-myo-inositol-5-phosphate metabolism pyruvate decarboxylation to acetyl CoA ATPase binding vacuolar proton-transporting V-type ATPase, V0 domain plant-type vacuole regulation of circadian rhythm vacuolar proton-transporting V-type ATPase complex assembly cytochrome b6f complex assembly vacuolar acidification protein tyrosine phosphatase activity Transcription_related, Transcription factor: MYB proton-transporting ATPase activity, rotational mechanism spliceosomal complex transferase activity, transferring acyl groups peptidyl-tyrosine dephosphorylation vegetative to reproductive phase transition of meristem ATP hydrolysis coupled proton transport positive regulation of transcription, DNA-templated ATP synthesis coupled proton transport mRNA splicing, via spliceosome | details |
| TreatCFM001890 | nonphotochemical quenching integral component of membrane formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |