TreatCFM001611's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.012678098 | kinase family |
| Ubiquitin_Proteasome_system, E2: UBC | 0.012678098 | ubs family |
| Viral carcinogenesis | 0.014865034 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
| protein autophosphorylation | 0.030317295 | GO:0046777 |
| peptidyl-serine phosphorylation | 0.030317295 | GO:0018105 |
| abscisic acid-activated signaling pathway | 0.030317295 | GO:0009738 |
| intracellular signal transduction | 0.038061026 | GO:0035556 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010306 | AT2G45620 (2.00E-175) | URT1|UTP:RNA uridylyltransferase 1 |
| CRO_T011227 | AT5G26040 (2.00E-54) | HDA2|histone deacetylase 2 |
| CRO_T013898 | AT1G36340 (1.00E-22) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T015545 | AT1G03370 (0) | C2 calcium/lipid-binding and GRAM domain containing protein |
| CRO_T023326 | AT3G02650 (2.00E-17) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T027232 | - | - |
| CRO_T032122 | AT1G12680 (2.00E-138) | PEPKR2|phosphoenolpyruvate carboxylase-related kinase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000169 | L-glutamate import L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport L-lysine transmembrane transporter activity L-glutamate transmembrane transporter activity antiporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001740 | transcription factor TFIID complex Basal transcription factors endosperm development transcription from RNA polymerase II promoter translational initiation regulation of transcription from RNA polymerase II promoter embryo development ending in seed dormancy transcription cofactor activity protein heterodimerization activity translation initiation factor activity heterocyclic compound binding organic cyclic compound binding | details |
| TreatCFM001929 | Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis microtubule proteolysis | details |
| TreatCFM001947 | mitochondrial fusion mitochondrial protein processing protein complex assembly protein import into mitochondrial intermembrane space cristae formation regulation of DNA-templated transcription, elongation Ubiquitin_Proteasome_system, E2: UBC nucleobase-containing compound metabolic process Ubiquitin mediated proteolysis regulation of transcription from RNA polymerase II promoter small GTPase mediated signal transduction | details |
| TreatCFM001948 | protein complex assembly protein import into mitochondrial intermembrane space mitochondrial protein processing mitochondrial fusion cristae formation Ubiquitin_Proteasome_system, E2: UBC Photosynthesis Ubiquitin mediated proteolysis nucleotidyltransferase activity metalloendopeptidase activity ATP-dependent peptidase activity | details |
| TreatCFM002004 | oxidation-reduction process ubiquinone-6 biosynthetic process alternative oxidase activity cinnamoyl-CoA reductase activity NADH dehydrogenase activity aerobic respiration III (alternative oxidase pathway) Phenylpropanoid biosynthesis coenzyme binding embryo development ending in seed dormancy protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |