TreatCFM001631's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytokinins degradation | 0.002657217 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase | 0.003722304 | kinase family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.007962822 | cazy family |
| cytokinin metabolic process | 0.023447049 | GO:0009690 |
| glycosyl compound metabolic process | 0.026031111 | GO:1901657 |
| Aminoacyl-tRNA biosynthesis | 0.031065353 | KEGG pathway |
| Zeatin biosynthesis | 0.031065353 | KEGG pathway |
| cytokinin dehydrogenase activity | 0.036341699 | GO:0019139 |
| cytoplasmic part | 0.041785998 | GO:0044444 |
| Starch and sucrose metabolism | 0.042500872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002061 | - | - |
| CRO_T010579 | AT3G18080 (0) | BGLU44|B-S glucosidase 44 |
| CRO_T012273 | AT5G38830 (8.00E-19) | Cysteinyl-tRNA synthetase, class Ia family protein |
| CRO_T020173 | AT2G41510 (3.00E-128) | ATCKX1|CYTOKININ OXIDASE/DEHYDROGENASE 1 |
| CRO_T021494 | AT5G42760 (3.00E-119) | Leucine carboxyl methyltransferase |
| CRO_T026843 | AT1G21250 (2.00E-137) | WAK1|cell wall-associated kinase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000586 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation removal of superoxide radicals maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational initiation amino acid transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD Cul4-RING E3 ubiquitin ligase complex | details |
| TreatCFM001721 | glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-glucosidase activity Transcription_related, Transcription factor: bHLH Starch and sucrose metabolism protein dimerization activity | details |
| TreatCFM002031 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding S-adenosylmethionine-dependent methyltransferase activity methylation | details |
| TreatCFM002096 | ribosomal large subunit export from nucleus endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding Transcription_related, Transcription factor: Trihelix ribosomal large subunit biogenesis Aminoacyl-tRNA biosynthesis preribosome, large subunit precursor ligase activity nucleolus cytoplasmic part | details |
Expression profiles
 Show details about module gene expression profiling |