TreatCFM002096's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ribosomal large subunit export from nucleus | 0.002462205 | GO:0000055 |
| endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.002462205 | GO:0000447 |
| positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.002462205 | GO:2000060 |
| cullin family protein binding | 0.002659181 | GO:0097602 |
| Transcription_related, Transcription factor: Trihelix | 0.004955377 | TF family |
| ribosomal large subunit biogenesis | 0.006273058 | GO:0042273 |
| Aminoacyl-tRNA biosynthesis | 0.011296492 | KEGG pathway |
| preribosome, large subunit precursor | 0.024339834 | GO:0030687 |
| ligase activity | 0.025094818 | GO:0016874 |
| nucleolus | 0.038032504 | GO:0005730 |
| cytoplasmic part | 0.038032504 | GO:0044444 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002482 | AT2G17080 (2.00E-33) | Arabidopsis protein of unknown function (DUF241) |
| CRO_T012273 | AT5G38830 (8.00E-19) | Cysteinyl-tRNA synthetase, class Ia family protein |
| CRO_T018876 | AT5G19300 (5.00E-135) | |
| CRO_T020507 | AT1G55830 (3.00E-57) | unknown protein |
| CRO_T029729 | AT5G28300 (3.00E-20) | GT2L|GT-2Like protein |
| CRO_T030276 | AT2G37990 (9.00E-101) | ribosome biogenesis regulatory protein (RRS1) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000184 | trans-lycopene biosynthesis II (plants) biotin biosynthetic process endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit export from nucleus ribosomal large subunit biogenesis dethiobiotin synthase activity adenosylmethionine-8-amino-7-oxononanoate transaminase activity Biotin metabolism ribosomal large subunit binding | details |
| TreatCFM000920 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) cullin family protein binding N,N-dimethylaniline monooxygenase activity | details |
| TreatCFM001089 | nucleolus protein-tetrapyrrole linkage ribosomal large subunit export from nucleus detection of visible light endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) photoreceptor activity large ribosomal subunit rRNA binding red, far-red light phototransduction phosphorelay sensor kinase activity preribosome, large subunit precursor ribosomal large subunit biogenesis Circadian rhythm - plant signal transduction by protein phosphorylation protein-chromophore linkage phosphorelay signal transduction system protein homodimerization activity RNA degradation cytosolic large ribosomal subunit | details |
| TreatCFM001631 | cytokinins degradation Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytokinin metabolic process glycosyl compound metabolic process Aminoacyl-tRNA biosynthesis Zeatin biosynthesis cytokinin dehydrogenase activity cytoplasmic part Starch and sucrose metabolism | details |
| TreatCFM001633 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC removal of superoxide radicals amino acid transmembrane transport cullin family protein binding N,N-dimethylaniline monooxygenase activity superoxide dismutase activity mitochondrial matrix oxidation-reduction process RNA transport amino acid transmembrane transporter activity NADP binding | details |
| TreatCFM002031 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding S-adenosylmethionine-dependent methyltransferase activity methylation | details |
| TreatCFM002111 | sulfate reduction II (assimilatory) Sulfur metabolism sulfate reduction sulfide oxidation, using siroheme sulfite reductase DNA packaging sulfite reductase activity sulfite reductase (ferredoxin) activity regulation of DNA replication base-excision repair recognition of pollen negative regulation of transcription, DNA-templated Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: Trihelix chloroplast nucleoid stromule DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |