TreatCFM001634's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lignin catabolic process | 0.000125366 | GO:0046274 |
| hydroquinone:oxygen oxidoreductase activity | 0.00016142 | GO:0052716 |
| apoplast | 0.000969495 | GO:0048046 |
| copper ion binding | 0.00134848 | GO:0005507 |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.006807707 | cazy family |
| lignin biosynthetic process | 0.032987301 | GO:0009809 |
| oxidoreductase activity, oxidizing metal ions | 0.042421483 | GO:0016722 |
| anchored component of plasma membrane | 0.044635076 | GO:0046658 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002588 | AT5G37500 (8.00E-14) | GORK|gated outwardly-rectifying K+ channel |
| CRO_T004698 | AT2G32300 (1.00E-21) | UCC1|uclacyanin 1 |
| CRO_T006406 | AT5G03260 (1.00E-131) | LAC11|laccase 11 |
| CRO_T006722 | AT5G59100 (5.00E-131) | Subtilisin-like serine endopeptidase family protein |
| CRO_T015448 | AT2G29130 (0) | LAC2|laccase 2 |
| CRO_T025749 | AT5G03170 (2.00E-54) | ATFLA11|ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11; FLA11|FASCICLIN-like arabinogalactan-protein 11 |
| CRO_T032469 | AT1G28220 (4.00E-70) | ATPUP3|purine permease 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000341 | pectin catabolic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cell wall modification metal ion transport cellular transition metal ion homeostasis Pentose and glucuronate interconversions homogalacturonan degradation triacylglycerol degradation pectate lyase activity transition metal ion binding pectinesterase activity aspartyl esterase activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001078 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | details |
| TreatCFM001583 | apoplast hydroquinone:oxygen oxidoreductase activity lignin catabolic process chloroplast organization 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity copper ion binding embryo development ending in seed dormancy Transcription_related, Transcription factor: ARF Transcription_related, Transcription factor: GRF cellular amino acid catabolic process menaquinone biosynthetic process Calcium signaling pathway protein import into chloroplast stroma Ubiquinone and other terpenoid-quinone biosynthesis developmental process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 thiamine pyrophosphate binding protein refolding transcription, DNA-templated microtubule-based process | details |
| TreatCFM001711 | 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) dynein complex Ubiquinone and other terpenoid-quinone biosynthesis cellular amino acid catabolic process menaquinone biosynthetic process 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity kinesin complex thiamine pyrophosphate binding DNA biosynthetic process microtubule-based process microtubule-based movement DNA replication DNA-directed DNA polymerase activity microtubule motor activity ATPase activity microtubule binding | details |
| TreatCFM001917 | Transcription_related, Transcription factor: GRF redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 protein import into chloroplast stroma developmental process chloroplast inner membrane lignin biosynthetic process chloroplast organization lignin catabolic process protein transporter activity hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions | details |
| TreatCFM001982 | starch biosynthesis chloroplast isoamylase complex amylopectin biosynthetic process response to molecule of bacterial origin root morphogenesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V isoamylase activity glycogen metabolic process Arp2/3 complex-mediated actin nucleation ATP binding activation of MAPKK activity multidimensional cell growth trichome morphogenesis Autophagy - yeast Arp2/3 protein complex MAP kinase kinase kinase activity MAPK cascade microtubule-based movement microtubule binding ATPase activity microtubule motor activity Starch and sucrose metabolism kinesin complex microtubule | details |
Expression profiles
 Show details about module gene expression profiling |