TreatCFM001711's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 0.002480253 | plantCyc |
| dynein complex | 0.003722304 | GO:0030286 |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.006191018 | KEGG pathway |
| cellular amino acid catabolic process | 0.006435695 | GO:0009063 |
| menaquinone biosynthetic process | 0.006435695 | GO:0009234 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity | 0.007789809 | GO:0070204 |
| 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity | 0.007789809 | GO:0070205 |
| kinesin complex | 0.009551151 | GO:0005871 |
| thiamine pyrophosphate binding | 0.019030503 | GO:0030976 |
| DNA biosynthetic process | 0.020080363 | GO:0071897 |
| microtubule-based process | 0.020080363 | GO:0007017 |
| microtubule-based movement | 0.025126516 | GO:0007018 |
| DNA replication | 0.025126516 | KEGG pathway |
| DNA-directed DNA polymerase activity | 0.029816839 | GO:0003887 |
| microtubule motor activity | 0.041432227 | GO:0003777 |
| ATPase activity | 0.043590583 | GO:0016887 |
| microtubule binding | 0.043590583 | GO:0008017 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001137 | AT2G13840 (2.00E-79) | Polymerase/histidinol phosphatase-like |
| CRO_T001645 | AT1G68890 (0) | PHYLLO|PHYLLO |
| CRO_T002588 | AT5G37500 (8.00E-14) | GORK|gated outwardly-rectifying K+ channel |
| CRO_T024850 | AT5G20110 (5.00E-44) | Dynein light chain type 1 family protein |
| CRO_T032017 | AT5G65930 (0) | KCBP|KINESIN-LIKE CALMODULIN-BINDING PROTEIN; PKCBP|POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN; ZWI|ZWICHEL |
| CRO_T032413 | AT3G19540 (1.00E-169) | Protein of unknown function (DUF620) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000341 | pectin catabolic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cell wall modification metal ion transport cellular transition metal ion homeostasis Pentose and glucuronate interconversions homogalacturonan degradation triacylglycerol degradation pectate lyase activity transition metal ion binding pectinesterase activity aspartyl esterase activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001078 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | details |
| TreatCFM001262 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Golgi medial cisterna ER membrane protein complex cis-Golgi network Phagosome protein folding in endoplasmic reticulum regulation of vesicle targeting, to, from or within Golgi SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion triacylglycerol degradation Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM001577 | quercetin sulfate biosynthesis aerobic respiration I (cytochrome c) Fanconi anemia pathway Ubiquitin_Proteasome_system, E3: RING ubiquinol-cytochrome-c reductase activity P-P-bond-hydrolysis-driven protein transmembrane transporter activity sulfotransferase activity myosin heavy chain kinase activity | details |
| TreatCFM001583 | apoplast hydroquinone:oxygen oxidoreductase activity lignin catabolic process chloroplast organization 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity copper ion binding embryo development ending in seed dormancy Transcription_related, Transcription factor: ARF Transcription_related, Transcription factor: GRF cellular amino acid catabolic process menaquinone biosynthetic process Calcium signaling pathway protein import into chloroplast stroma Ubiquinone and other terpenoid-quinone biosynthesis developmental process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 thiamine pyrophosphate binding protein refolding transcription, DNA-templated microtubule-based process | details |
| TreatCFM001634 | lignin catabolic process hydroquinone:oxygen oxidoreductase activity apoplast copper ion binding redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 lignin biosynthetic process oxidoreductase activity, oxidizing metal ions anchored component of plasma membrane | details |
| TreatCFM001982 | starch biosynthesis chloroplast isoamylase complex amylopectin biosynthetic process response to molecule of bacterial origin root morphogenesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V isoamylase activity glycogen metabolic process Arp2/3 complex-mediated actin nucleation ATP binding activation of MAPKK activity multidimensional cell growth trichome morphogenesis Autophagy - yeast Arp2/3 protein complex MAP kinase kinase kinase activity MAPK cascade microtubule-based movement microtubule binding ATPase activity microtubule motor activity Starch and sucrose metabolism kinesin complex microtubule | details |
| TreatCFM002047 | kinesin complex microtubule-based movement microtubule binding microtubule motor activity ATPase activity UDP-D-galacturonate biosynthesis II (from D-galacturonate) oxidoreductase activity phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism phosphatidylcholine acyl editing phospholipases triacylglycerol degradation | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |