TreatCFM001982's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| starch biosynthesis | 0.003895237 | plantCyc |
| chloroplast isoamylase complex | 0.006436646 | GO:0010368 |
| amylopectin biosynthetic process | 0.006923763 | GO:0010021 |
| response to molecule of bacterial origin | 0.006923763 | GO:0002237 |
| root morphogenesis | 0.006923763 | GO:0010015 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.007584141 | cazy family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.007584141 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.007584141 | cazy family |
| Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V | 0.007584141 | kinase family |
| isoamylase activity | 0.007819149 | GO:0019156 |
| glycogen metabolic process | 0.010381041 | GO:0005977 |
| Arp2/3 complex-mediated actin nucleation | 0.010381041 | GO:0034314 |
| ATP binding | 0.010473177 | GO:0005524 |
| activation of MAPKK activity | 0.012966717 | GO:0000186 |
| multidimensional cell growth | 0.012966717 | GO:0009825 |
| trichome morphogenesis | 0.012966717 | GO:0010090 |
| Autophagy - yeast | 0.013806304 | KEGG pathway |
| Arp2/3 protein complex | 0.016082105 | GO:0005885 |
| MAP kinase kinase kinase activity | 0.017354074 | GO:0004709 |
| MAPK cascade | 0.020722236 | GO:0000165 |
| microtubule-based movement | 0.024328849 | GO:0007018 |
| microtubule binding | 0.025523612 | GO:0008017 |
| ATPase activity | 0.025523612 | GO:0016887 |
| microtubule motor activity | 0.025523612 | GO:0003777 |
| Starch and sucrose metabolism | 0.034773441 | KEGG pathway |
| kinesin complex | 0.038522977 | GO:0005871 |
| microtubule | 0.047270771 | GO:0005874 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002023 | AT3G05010 (1.00E-104) | Cand2|candidate G-protein Coupled Receptor 2 |
| CRO_T002588 | AT5G37500 (8.00E-14) | GORK|gated outwardly-rectifying K+ channel |
| CRO_T020415 | AT3G27000 (0) | ARP2|actin related protein 2; WRM|WURM |
| CRO_T022275 | AT3G49650 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T026785 | AT2G42960 (0) | Protein kinase superfamily protein |
| CRO_T030178 | AT1G03310 (5.00E-21) | ATISA2|ISOAMYLASE 2; BE2|BRANCHING ENZYME 2; DBE1|debranching enzyme 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000341 | pectin catabolic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cell wall modification metal ion transport cellular transition metal ion homeostasis Pentose and glucuronate interconversions homogalacturonan degradation triacylglycerol degradation pectate lyase activity transition metal ion binding pectinesterase activity aspartyl esterase activity hydrolase activity, acting on ester bonds | details |
| TreatCFM000723 | UFM1 hydrolase activity Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Pentose and glucuronate interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity MAP kinase kinase kinase activity aminopeptidase activity manganese ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc activation of MAPKK activity pectin catabolic process MAPK cascade | details |
| TreatCFM001078 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | details |
| TreatCFM001197 | uracil degradation I (reductive) Starch and sucrose metabolism chloroplast isoamylase complex MicroRNAs in cancer adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-ureidopropionase activity isoamylase activity cytoskeleton-dependent intracellular transport protein localization amylopectin biosynthetic process uracil catabolic process glycogen metabolic process Pyrimidine metabolism trehalose biosynthetic process ribonuclease III activity ATP-dependent microtubule motor activity, plus-end-directed Ubiquitin_Proteasome_system, E3 adaptor: BTB RNA phosphodiester bond hydrolysis, endonucleolytic kinesin complex protein catabolic process microtubule | details |
| TreatCFM001634 | lignin catabolic process hydroquinone:oxygen oxidoreductase activity apoplast copper ion binding redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 lignin biosynthetic process oxidoreductase activity, oxidizing metal ions anchored component of plasma membrane | details |
| TreatCFM001711 | 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) dynein complex Ubiquinone and other terpenoid-quinone biosynthesis cellular amino acid catabolic process menaquinone biosynthetic process 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity kinesin complex thiamine pyrophosphate binding DNA biosynthetic process microtubule-based process microtubule-based movement DNA replication DNA-directed DNA polymerase activity microtubule motor activity ATPase activity microtubule binding | details |
| TreatCFM002093 | Ubiquitin_Proteasome_system, E3 adaptor: DWD UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V PI3K-Akt signaling pathway UDP-sugars interconversion myosin heavy chain kinase activity racemase and epimerase activity, acting on carbohydrates and derivatives chaperone binding MAP kinase kinase kinase activity coenzyme binding Amino sugar and nucleotide sugar metabolism MAPK cascade activation of MAPKK activity | details |
Expression profiles
 Show details about module gene expression profiling |