TreatCFM001653's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| superoxide dismutase activity | 8.49E-05 | GO:0004784 |
| removal of superoxide radicals | 0.000163711 | GO:0019430 |
| Amyotrophic lateral sclerosis (ALS) | 0.003412919 | KEGG pathway |
| protein folding in endoplasmic reticulum | 0.00770255 | GO:0034975 |
| cellular response to high light intensity | 0.00770255 | GO:0071486 |
| regulation of vesicle targeting, to, from or within Golgi | 0.00962648 | GO:0048209 |
| cytokinins 7-N-glucoside biosynthesis | 0.011789537 | plantCyc |
| cytokinins 9-N-glucoside biosynthesis | 0.011789537 | plantCyc |
| reactive oxygen species degradation | 0.011789537 | plantCyc |
| superoxide radicals degradation | 0.011789537 | plantCyc |
| ER membrane protein complex | 0.01211569 | GO:0072546 |
| Golgi medial cisterna | 0.01211569 | GO:0005797 |
| cis-Golgi network | 0.014131212 | GO:0005801 |
| Peroxisome | 0.014365458 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.014365458 | KEGG pathway |
| pyrimidine ribonucleotides interconversion | 0.020705489 | plantCyc |
| intra-Golgi vesicle-mediated transport | 0.030763796 | GO:0006891 |
| large ribosomal subunit | 0.033286569 | GO:0015934 |
| chloroplast | 0.033286569 | GO:0009507 |
| SNARE complex | 0.039254006 | GO:0031201 |
| vesicle fusion | 0.040974783 | GO:0006906 |
| ER to Golgi vesicle-mediated transport | 0.042777464 | GO:0006888 |
| protein transport | 0.047940777 | GO:0015031 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.049602139 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004045 | AT1G14250 (1.00E-23) | GDA1/CD39 nucleoside phosphatase family protein |
| CRO_T007900 | AT1G15880 (1.00E-54) | GOS11|golgi snare 11 |
| CRO_T011191 | AT2G28190 (9.00E-72) | CSD2|copper/zinc superoxide dismutase 2 |
| CRO_T011284 | AT1G08830 (3.00E-10) | CSD1|copper/zinc superoxide dismutase 1 |
| CRO_T017623 | - | - |
| CRO_T026048 | AT3G55700 (1.00E-121) | UDP-Glycosyltransferase superfamily protein |
| CRO_T029239 | AT4G12590 (4.00E-29) | Protein of unknown function DUF106, transmembrane |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000344 | Histidine metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc choline biosynthesis I cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis L-ornithine biosynthesis I phosphatidylethanolamine biosynthesis II Cytochrome_P450, Cytochrome P450: CYP71B 2-Oxocarboxylic acid metabolism ethanolamine metabolic process carboxy-lyase activity glycopeptide alpha-N-acetylgalactosaminidase activity 17-O-deacetylvindoline O-acetyltransferase activity sucrose alpha-glucosidase activity metabolic process vindoline and vinblastine biosynthesis cellular amino acid metabolic process | details |
| TreatCFM001262 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Golgi medial cisterna ER membrane protein complex cis-Golgi network Phagosome protein folding in endoplasmic reticulum regulation of vesicle targeting, to, from or within Golgi SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion triacylglycerol degradation Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM001263 | ER membrane protein complex DNA-directed RNA polymerase I complex protein folding in endoplasmic reticulum transcription from RNA polymerase I promoter RNA polymerase I activity single-organism metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001515 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) ER membrane protein complex DNA-directed RNA polymerase I complex ATP-dependent 5'-3' DNA helicase activity protein folding in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: BTB transcription from RNA polymerase I promoter RNA polymerase I activity phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism DNA duplex unwinding | details |
| TreatCFM001899 | GABAergic synapse Renin-angiotensin system trehalose-phosphatase activity dipeptidyl-peptidase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I pentose phosphate pathway (non-oxidative branch) UDP-glucosyltransferase activity serine-type carboxypeptidase activity flavonoid metabolic process trehalose biosynthetic process Rubisco shunt pyrimidine ribonucleotides interconversion triacylglycerol degradation lipid metabolic process dephosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM002121 | Amyotrophic lateral sclerosis (ALS) Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I beta-sitosterol UDP-glucosyltransferase activity dipeptidyl-peptidase activity superoxide dismutase activity lipid glycosylation pyrimidine ribonucleotides interconversion seed development removal of superoxide radicals sterol metabolic process serine-type carboxypeptidase activity translational initiation chloroplast RNA transport translation initiation factor activity | details |
| TreatCFM002134 | Cell cycle - Caulobacter UDP-D-galacturonate biosynthesis II (from D-galacturonate) serine-type endopeptidase activity phosphate acquisition Golgi medial cisterna cis-Golgi network response to reactive oxygen species microtubule organizing center organization microtubule nucleation regulation of vesicle targeting, to, from or within Golgi proteolysis spindle assembly cytokinesis by cell plate formation mitotic nuclear division regulation of gene expression peptidyl-tyrosine dephosphorylation intra-Golgi vesicle-mediated transport phosphotransferase activity, alcohol group as acceptor SNARE interactions in vesicular transport protein tyrosine phosphatase activity SNARE binding SNAP receptor activity vesicle fusion Amino sugar and nucleotide sugar metabolism ER to Golgi vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |