TreatCFM001515's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-D-galacturonate biosynthesis II (from D-galacturonate) | 0.000531915 | plantCyc |
| ER membrane protein complex | 0.003900421 | GO:0072546 |
| DNA-directed RNA polymerase I complex | 0.005360306 | GO:0005736 |
| ATP-dependent 5'-3' DNA helicase activity | 0.009654255 | GO:0043141 |
| protein folding in endoplasmic reticulum | 0.009654255 | GO:0034975 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.010241984 | ubs family |
| transcription from RNA polymerase I promoter | 0.011259969 | GO:0006360 |
| RNA polymerase I activity | 0.011792672 | GO:0001054 |
| phosphotransferase activity, alcohol group as acceptor | 0.011792672 | GO:0016773 |
| Amino sugar and nucleotide sugar metabolism | 0.014279181 | KEGG pathway |
| DNA duplex unwinding | 0.025704764 | GO:0032508 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002847 | AT3G49830 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T007418 | AT1G75670 (7.00E-23) | DNA-directed RNA polymerases |
| CRO_T012364 | AT3G12590 (9.00E-95) | unknown protein |
| CRO_T021177 | AT5G10250 (4.00E-83) | DOT3|DEFECTIVELY ORGANIZED TRIBUTARIES 3 |
| CRO_T026494 | AT3G10700 (2.00E-135) | GalAK|galacturonic acid kinase |
| CRO_T029239 | AT4G12590 (4.00E-29) | Protein of unknown function DUF106, transmembrane |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000935 | DNA-directed RNA polymerase I complex transcription from RNA polymerase I promoter recognition of pollen trehalose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity RNA polymerase I activity Starch and sucrose metabolism | details |
| TreatCFM001262 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Golgi medial cisterna ER membrane protein complex cis-Golgi network Phagosome protein folding in endoplasmic reticulum regulation of vesicle targeting, to, from or within Golgi SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion triacylglycerol degradation Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM001263 | ER membrane protein complex DNA-directed RNA polymerase I complex protein folding in endoplasmic reticulum transcription from RNA polymerase I promoter RNA polymerase I activity single-organism metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001653 | superoxide dismutase activity removal of superoxide radicals Amyotrophic lateral sclerosis (ALS) protein folding in endoplasmic reticulum cellular response to high light intensity regulation of vesicle targeting, to, from or within Golgi cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis reactive oxygen species degradation superoxide radicals degradation ER membrane protein complex Golgi medial cisterna cis-Golgi network Peroxisome SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion intra-Golgi vesicle-mediated transport large ribosomal subunit chloroplast SNARE complex vesicle fusion ER to Golgi vesicle-mediated transport protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM002047 | kinesin complex microtubule-based movement microtubule binding microtubule motor activity ATPase activity UDP-D-galacturonate biosynthesis II (from D-galacturonate) oxidoreductase activity phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism phosphatidylcholine acyl editing phospholipases triacylglycerol degradation | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002134 | Cell cycle - Caulobacter UDP-D-galacturonate biosynthesis II (from D-galacturonate) serine-type endopeptidase activity phosphate acquisition Golgi medial cisterna cis-Golgi network response to reactive oxygen species microtubule organizing center organization microtubule nucleation regulation of vesicle targeting, to, from or within Golgi proteolysis spindle assembly cytokinesis by cell plate formation mitotic nuclear division regulation of gene expression peptidyl-tyrosine dephosphorylation intra-Golgi vesicle-mediated transport phosphotransferase activity, alcohol group as acceptor SNARE interactions in vesicular transport protein tyrosine phosphatase activity SNARE binding SNAP receptor activity vesicle fusion Amino sugar and nucleotide sugar metabolism ER to Golgi vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |