TreatCFM001263's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ER membrane protein complex | 0.002127502 | GO:0072546 |
| DNA-directed RNA polymerase I complex | 0.002923803 | GO:0005736 |
| protein folding in endoplasmic reticulum | 0.002925532 | GO:0034975 |
| transcription from RNA polymerase I promoter | 0.003412112 | GO:0006360 |
| RNA polymerase I activity | 0.010720611 | GO:0001054 |
| single-organism metabolic process | 0.016519326 | GO:0044710 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002019 | AT2G25950 (2.00E-101) | Protein of unknown function (DUF1000) |
| CRO_T007418 | AT1G75670 (7.00E-23) | DNA-directed RNA polymerases |
| CRO_T028602 | AT2G17550 (3.00E-115) | TRM26|TON1 Recruiting Motif 26 |
| CRO_T029239 | AT4G12590 (4.00E-29) | Protein of unknown function DUF106, transmembrane |
| CRO_T029970 | AT3G63290 (1.00E-74) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T030066 | AT4G05497 (2.00E-11) | RNI-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000615 | hydrolase activity, hydrolyzing N-glycosyl compounds trans-zeatin biosynthesis damaged DNA binding nucleus response to UV-B cytokinin biosynthetic process Cul4-RING E3 ubiquitin ligase complex Ubiquitin mediated proteolysis DNA repair Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000935 | DNA-directed RNA polymerase I complex transcription from RNA polymerase I promoter recognition of pollen trehalose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity RNA polymerase I activity Starch and sucrose metabolism | details |
| TreatCFM001262 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Golgi medial cisterna ER membrane protein complex cis-Golgi network Phagosome protein folding in endoplasmic reticulum regulation of vesicle targeting, to, from or within Golgi SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion triacylglycerol degradation Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM001357 | chlorophyll catabolic process leucine catabolic process calcium ion transmembrane transport chloroplast inner membrane calcium-transporting ATPase activity | details |
| TreatCFM001515 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) ER membrane protein complex DNA-directed RNA polymerase I complex ATP-dependent 5'-3' DNA helicase activity protein folding in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: BTB transcription from RNA polymerase I promoter RNA polymerase I activity phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism DNA duplex unwinding | details |
| TreatCFM001653 | superoxide dismutase activity removal of superoxide radicals Amyotrophic lateral sclerosis (ALS) protein folding in endoplasmic reticulum cellular response to high light intensity regulation of vesicle targeting, to, from or within Golgi cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis reactive oxygen species degradation superoxide radicals degradation ER membrane protein complex Golgi medial cisterna cis-Golgi network Peroxisome SNARE interactions in vesicular transport pyrimidine ribonucleotides interconversion intra-Golgi vesicle-mediated transport large ribosomal subunit chloroplast SNARE complex vesicle fusion ER to Golgi vesicle-mediated transport protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |