TreatCFM001683's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sucrose transport | 0.006080662 | GO:0015770 |
| barbed-end actin filament capping | 0.006080662 | GO:0051016 |
| F-actin capping protein complex | 0.008995538 | GO:0008290 |
| sucrose transmembrane transporter activity | 0.012161323 | GO:0008515 |
| cis-Golgi network | 0.015735213 | GO:0005801 |
| actin filament organization | 0.017208695 | GO:0007015 |
| aerobic respiration I (cytochrome c) | 0.018891869 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.018891869 | plantCyc |
| ascorbate glutathione cycle | 0.018891869 | plantCyc |
| TCA cycle II (plants and fungi) | 0.018891869 | plantCyc |
| Endocytosis | 0.020507301 | KEGG pathway |
| cellular protein metabolic process | 0.02123708 | GO:0044267 |
| protein disulfide oxidoreductase activity | 0.037095776 | GO:0015035 |
| actin binding | 0.037095776 | GO:0003779 |
| lipid binding | 0.037095776 | GO:0008289 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.041052335 | ubs family |
| cell redox homeostasis | 0.045919046 | GO:0045454 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001374 | AT5G62575 (8.00E-19) | SDH7|succinate dehydrogenase 7; SDH7B|succinate dehydrogenase 7B |
| CRO_T011376 | AT3G05520 (6.00E-134) | CPA|capping protein A |
| CRO_T013720 | - | - |
| CRO_T013775 | AT3G61030 (6.00E-22) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T015868 | AT1G09960 (4.00E-170) | ATSUC4|SUCROSE TRANSPORTER 4 |
| CRO_T023381 | AT2G37160 (3.00E-140) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T032264 | AT3G15660 (7.00E-18) | ATGRX4|A. THALIANA GLUTAREDOXIN 4; GRX4|glutaredoxin 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001540 | ascorbate glutathione cycle lipoate synthase activity glutathione dehydrogenase (ascorbate) activity Ascorbate and aldarate metabolism Proteasome protein glutathionylation protein lipoylation fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis shoot system development lipoate biosynthetic process acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding threonine-type endopeptidase activity | details |
| TreatCFM001684 | aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) TCA cycle II (plants and fungi) cellular protein metabolic process | details |
| TreatCFM001685 | 6-phosphogluconolactonase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) pentose phosphate pathway (oxidative branch) I TCA cycle II (plants and fungi) cellular protein metabolic process pentose-phosphate shunt Carbon metabolism | details |
| TreatCFM001828 | ascorbate glutathione cycle benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I sucrose degradation III (sucrose invertase) Transcription_related, Transcription factor: Orphans AMPK signaling pathway Glycolysis / Gluconeogenesis barrier septum assembly cellular aldehyde metabolic process cellular response to nitric oxide ubiquinone-6 biosynthetic process cellular response to hydrogen peroxide cellular response to molecule of bacterial origin regulation of stomatal closure GTP binding aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity negative regulation of ethylene-activated signaling pathway transcription from plastid promoter NADH dehydrogenase activity phosphotransferase activity, alcohol group as acceptor negative regulation of abscisic acid-activated signaling pathway peptidyl-histidine phosphorylation oxidation-reduction process aldehyde dehydrogenase (NAD) activity phosphorelay sensor kinase activity signal transduction by protein phosphorylation root development chloroplast organization translational elongation phosphorelay signal transduction system | details |
| TreatCFM002107 | RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly Transcription_related, Transcription regulator: MED6 RNA polymerase II transcriptional preinitiation complex assembly core mediator complex benzoate biosynthesis I (CoA-dependent, β-oxidative) regulation of transcription from RNA polymerase II promoter mediator complex | details |
Expression profiles
 Show details about module gene expression profiling |