TreatCFM001684's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| aerobic respiration I (cytochrome c) | 0.014259339 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.014259339 | plantCyc |
| TCA cycle II (plants and fungi) | 0.014259339 | plantCyc |
| cellular protein metabolic process | 0.014866131 | GO:0044267 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001374 | AT5G62575 (8.00E-19) | SDH7|succinate dehydrogenase 7; SDH7B|succinate dehydrogenase 7B |
| CRO_T005804 | AT2G47940 (3.00E-14) | DEG2|degradation of periplasmic proteins 2; DEGP2|DEGP protease 2; EMB3117|EMBRYO DEFECTIVE 3117 |
| CRO_T007987 | AT1G16210 (6.00E-62) | unknown protein |
| CRO_T013720 | - | - |
| CRO_T023381 | AT2G37160 (3.00E-140) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T032648 | AT5G55970 (1.00E-18) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000337 | details | |
| TreatCFM000768 | carbohydrate binding formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II cobalt ion binding | details |
| TreatCFM001540 | ascorbate glutathione cycle lipoate synthase activity glutathione dehydrogenase (ascorbate) activity Ascorbate and aldarate metabolism Proteasome protein glutathionylation protein lipoylation fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis shoot system development lipoate biosynthetic process acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding threonine-type endopeptidase activity | details |
| TreatCFM001683 | sucrose transport barbed-end actin filament capping F-actin capping protein complex sucrose transmembrane transporter activity cis-Golgi network actin filament organization aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) ascorbate glutathione cycle TCA cycle II (plants and fungi) Endocytosis cellular protein metabolic process protein disulfide oxidoreductase activity actin binding lipid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD cell redox homeostasis | details |
| TreatCFM001685 | 6-phosphogluconolactonase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) pentose phosphate pathway (oxidative branch) I TCA cycle II (plants and fungi) cellular protein metabolic process pentose-phosphate shunt Carbon metabolism | details |
| TreatCFM002107 | RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly Transcription_related, Transcription regulator: MED6 RNA polymerase II transcriptional preinitiation complex assembly core mediator complex benzoate biosynthesis I (CoA-dependent, β-oxidative) regulation of transcription from RNA polymerase II promoter mediator complex | details |
Expression profiles
 Show details about module gene expression profiling |