TreatCFM001717's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellular macromolecule metabolic process | 0.000356366 | GO:0044260 |
| cellular nitrogen compound metabolic process | 0.01765175 | GO:0034641 |
| photosystem II repair | 0.01765175 | GO:0010206 |
| gene expression | 0.01765175 | GO:0010467 |
| photosystem II assembly | 0.01765175 | GO:0010207 |
| chloroplast thylakoid lumen | 0.019929132 | GO:0009543 |
| peptidyl-tyrosine dephosphorylation | 0.023930477 | GO:0035335 |
| nucleic acid metabolic process | 0.023930477 | GO:0090304 |
| primary metabolic process | 0.041784424 | GO:0044238 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002681 | - | - |
| CRO_T008195 | AT5G46250 (1.00E-09) | LARP6a|La related protein 6a |
| CRO_T012054 | AT3G58110 (2.00E-44) | unknown protein |
| CRO_T021689 | AT1G05385 (4.00E-34) | LPA19|LOW PSII ACCUMULATION 19 |
| CRO_T021828 | AT2G22430 (3.00E-32) | ATHB6|homeobox protein 6 |
| CRO_T022446 | AT5G04290 (8.00E-174) | KTF1|kow domain-containing transcription factor 1; SPT5L|SPT5-LIKE |
| CRO_T023989 | AT2G41660 (1.00E-66) | MIZ1|mizu-kussei 1 |
| CRO_T026748 | AT5G65700 (3.00E-114) | BAM1|BARELY ANY MERISTEM 1 |
| CRO_T028892 | AT1G28110 (0) | SCPL45|serine carboxypeptidase-like 45 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000300 | Monoterpenoid biosynthesis mitochondrial translational termination cellular potassium ion homeostasis rescue of stalled ribosome interspecies interaction between organisms photosystem II repair photosystem II assembly 2-Oxocarboxylic acid metabolism primary root development translation release factor activity, codon nonspecific arginine biosynthetic process | details |
| TreatCFM000860 | chloroplast thylakoid lumen photosystem II repair photosystem II assembly glucose transmembrane transporter activity sugar:proton symporter activity proton transport glucose transmembrane transport glucose import 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM000895 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor chaperone binding brassinosteroids inactivation secologanin and strictosidine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001111 | Pyrimidine metabolism uridylate kinase activity cytidylate kinase activity pyrimidine nucleotide biosynthetic process photosystem II repair 'de novo' pyrimidine nucleobase biosynthetic process photosystem II assembly CMP phosphorylation UTP and CTP de novo biosynthesis nucleotide phosphorylation RNA methylation chloroplast thylakoid lumen pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001670 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase MAPK signaling pathway regulation of phosphorylation regulation of nitrogen utilization regulation of fatty acid biosynthetic process acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process photosystem II repair photosystem II assembly chloroplast thylakoid lumen N,N-dimethylaniline monooxygenase activity regulation of catalytic activity NADP binding | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
| TreatCFM001935 | L-citrulline degradation ornithine carbamoyltransferase activity acetylglutamate kinase regulator activity L-arginine biosynthesis I (via L-ornithine) urea cycle regulation of phosphorylation regulation of fatty acid biosynthetic process regulation of nitrogen utilization arginine biosynthetic process via ornithine L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle anthocyanin-containing compound biosynthetic process regulation of membrane potential protein tyrosine/serine/threonine phosphatase activity peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity voltage-gated potassium channel activity Biosynthesis of amino acids Plant-pathogen interaction potassium ion transmembrane transport regulation of catalytic activity amino acid binding | details |
Expression profiles
 Show details about module gene expression profiling |