TreatCFM001111's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Pyrimidine metabolism | 0.006191018 | KEGG pathway |
| uridylate kinase activity | 0.007082717 | GO:0009041 |
| cytidylate kinase activity | 0.007082717 | GO:0004127 |
| pyrimidine nucleotide biosynthetic process | 0.007163317 | GO:0006221 |
| photosystem II repair | 0.007163317 | GO:0010206 |
| 'de novo' pyrimidine nucleobase biosynthetic process | 0.007163317 | GO:0006207 |
| photosystem II assembly | 0.007163317 | GO:0010207 |
| CMP phosphorylation | 0.007793928 | plantCyc |
| UTP and CTP de novo biosynthesis | 0.007793928 | plantCyc |
| nucleotide phosphorylation | 0.008332418 | GO:0046939 |
| RNA methylation | 0.008677037 | GO:0001510 |
| chloroplast thylakoid lumen | 0.013291978 | GO:0009543 |
| pyrimidine ribonucleotides interconversion | 0.014259339 | plantCyc |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T021022 | AT1G10580 (8.00E-12) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T021689 | AT1G05385 (4.00E-34) | LPA19|LOW PSII ACCUMULATION 19 |
| CRO_T024192 | AT4G38020 (6.00E-91) | tRNA/rRNA methyltransferase (SpoU) family protein |
| CRO_T026186 | AT3G60961 (2.00E-37) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T030526 | AT3G58010 (1.00E-81) | PGL34|plastoglobulin 34kD |
| CRO_T031840 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000300 | Monoterpenoid biosynthesis mitochondrial translational termination cellular potassium ion homeostasis rescue of stalled ribosome interspecies interaction between organisms photosystem II repair photosystem II assembly 2-Oxocarboxylic acid metabolism primary root development translation release factor activity, codon nonspecific arginine biosynthetic process | details |
| TreatCFM000587 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase cell surface receptor signaling pathway | details |
| TreatCFM000860 | chloroplast thylakoid lumen photosystem II repair photosystem II assembly glucose transmembrane transporter activity sugar:proton symporter activity proton transport glucose transmembrane transport glucose import 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM000895 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor chaperone binding brassinosteroids inactivation secologanin and strictosidine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001670 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase MAPK signaling pathway regulation of phosphorylation regulation of nitrogen utilization regulation of fatty acid biosynthetic process acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process photosystem II repair photosystem II assembly chloroplast thylakoid lumen N,N-dimethylaniline monooxygenase activity regulation of catalytic activity NADP binding | details |
| TreatCFM001699 | histone lysine methylation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001717 | cellular macromolecule metabolic process cellular nitrogen compound metabolic process photosystem II repair gene expression photosystem II assembly chloroplast thylakoid lumen peptidyl-tyrosine dephosphorylation nucleic acid metabolic process primary metabolic process | details |
| TreatCFM001809 | Transcription_related, Transcription factor: NF-YA Antigen processing and presentation binding | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |