TreatCFM000895's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 0.012169917 | GO:0016616 |
| chaperone binding | 0.012169917 | GO:0051087 |
| brassinosteroids inactivation | 0.014043769 | plantCyc |
| secologanin and strictosidine biosynthesis | 0.014043769 | plantCyc |
| Phenylpropanoid biosynthesis | 0.024572761 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000723 | AT1G18940 (1.00E-29) | Nodulin-like / Major Facilitator Superfamily protein |
| CRO_T010119 | AT4G37990 (9.00E-66) | ATCAD8|CINNAMYL-ALCOHOL DEHYDROGENASE 8; CAD-B2|CINNAMYL-ALCOHOL DEHYDROGENASE B2; ELI3|ELICITOR-ACTIVATED GENE 3; ELI3-2|elicitor-activated gene 3-2 |
| CRO_T016511 | AT5G62390 (1.00E-82) | ATBAG7|BCL-2-associated athanogene 7 |
| CRO_T023989 | AT2G41660 (1.00E-66) | MIZ1|mizu-kussei 1 |
| CRO_T030526 | AT3G58010 (1.00E-81) | PGL34|plastoglobulin 34kD |
| CRO_T032416 | AT1G18590 (2.00E-72) | ATSOT17|SULFOTRANSFERASE 17; ATST5C|ARABIDOPSIS SULFOTRANSFERASE 5C |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000019 | details | |
| TreatCFM000186 | D-serine degradation D-serine metabolism serine racemase activity D-serine ammonia-lyase activity L-serine ammonia-lyase activity D-serine biosynthetic process Glycine, serine and threonine metabolism Tropane, piperidine and pyridine alkaloid biosynthesis L-serine metabolic process | details |
| TreatCFM000226 | inosine-5'-phosphate biosynthesis II phosphoribosylaminoimidazole carboxylase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity Transcription_related, Transcription factor: LOB adenine biosynthetic process 'de novo' IMP biosynthetic process | details |
| TreatCFM000409 | DNA replication initiation DNA replication DNA duplex unwinding MCM complex DNA helicase activity positive regulation of G1/S transition of mitotic cell cycle regulation of chromatin silencing at telomere mitotic DNA replication preinitiation complex assembly pre-replicative complex assembly involved in nuclear cell cycle DNA replication premeiotic DNA replication DNA replication preinitiation complex nuclear pre-replicative complex high-affinity potassium ion import regulation of cell proliferation double-strand break repair via break-induced replication regulation of root meristem growth (3S)-linalool biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) gametophyte development replication fork protection complex THO complex 3'-5' DNA helicase activity DNA replication origin binding regulation of membrane potential isoprenoid biosynthetic process Cell cycle Terpenoid backbone biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups voltage-gated potassium channel activity single-stranded DNA binding DNA metabolic process DNA binding chromatin binding cell division | details |
| TreatCFM000587 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase cell surface receptor signaling pathway | details |
| TreatCFM001111 | Pyrimidine metabolism uridylate kinase activity cytidylate kinase activity pyrimidine nucleotide biosynthetic process photosystem II repair 'de novo' pyrimidine nucleobase biosynthetic process photosystem II assembly CMP phosphorylation UTP and CTP de novo biosynthesis nucleotide phosphorylation RNA methylation chloroplast thylakoid lumen pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001699 | histone lysine methylation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001717 | cellular macromolecule metabolic process cellular nitrogen compound metabolic process photosystem II repair gene expression photosystem II assembly chloroplast thylakoid lumen peptidyl-tyrosine dephosphorylation nucleic acid metabolic process primary metabolic process | details |
| TreatCFM001809 | Transcription_related, Transcription factor: NF-YA Antigen processing and presentation binding | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |