TreatCFM001724's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP97C | 0.001063908 | CYP450 family |
| regulation of photorespiration | 0.004514645 | GO:0080093 |
| regulation of fatty acid beta-oxidation | 0.004514645 | GO:0031998 |
| zeinoxanthin epsilon hydroxylase activity | 0.005213151 | GO:0009974 |
| heme binding | 0.005514414 | GO:0020037 |
| L-ascorbate peroxidase activity | 0.005514414 | GO:0016688 |
| L-malate dehydrogenase activity | 0.005861762 | GO:0030060 |
| oxidation-reduction process | 0.006769966 | GO:0055114 |
| glyoxylate cycle | 0.006769966 | plantCyc |
| carotenoid biosynthetic process | 0.009023953 | GO:0016117 |
| ascorbate glutathione cycle | 0.011715731 | plantCyc |
| L-ascorbate degradation V | 0.011715731 | plantCyc |
| lutein biosynthesis | 0.011715731 | plantCyc |
| Transcription_related, Transcription factor: Orphans | 0.011931004 | TF family |
| TCA cycle II (plants and fungi) | 0.012491241 | plantCyc |
| malate metabolic process | 0.013527931 | GO:0006108 |
| Mitophagy - yeast | 0.014767773 | KEGG pathway |
| glyoxysome | 0.015419326 | GO:0009514 |
| Ascorbate and aldarate metabolism | 0.016216968 | KEGG pathway |
| Carotenoid biosynthesis | 0.016216968 | KEGG pathway |
| chloroplast thylakoid lumen | 0.017340334 | GO:0009543 |
| tricarboxylic acid cycle | 0.019950631 | GO:0006099 |
| gluconeogenesis I | 0.021644566 | plantCyc |
| response to oxidative stress | 0.046833562 | GO:0006979 |
| cellular oxidant detoxification | 0.046833562 | GO:0098869 |
| chloroplast thylakoid | 0.049983386 | GO:0009534 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002054 | AT2G22780 (2.00E-141) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T003766 | AT1G50450 (5.00E-88) | Saccharopine dehydrogenase |
| CRO_T009128 | AT2G31190 (2.00E-15) | RUS2|ROOT UV-B SENSITIVE 2; WXR1|weak auxin response1 |
| CRO_T017324 | AT4G35970 (2.00E-14) | APX5|ascorbate peroxidase 5 |
| CRO_T017594 | AT3G53130 (0) | CYP97C1|CYTOCHROME P450 97C1; LUT1|LUTEIN DEFICIENT 1 |
| CRO_T030042 | AT1G24200 (6.00E-05) | Paired amphipathic helix (PAH2) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001308 | regulation of fatty acid beta-oxidation regulation of photorespiration protein import into chloroplast thylakoid membrane peptidyl-pyrromethane cofactor linkage tetrapyrrole biosynthetic process glyoxylate cycle chloroplast envelope signal recognition particle, chloroplast targeting glyoxysome chloroplast thylakoid membrane hydroxymethylbilane synthase activity L-ascorbate peroxidase activity L-malate dehydrogenase activity ascorbate glutathione cycle L-ascorbate degradation V tetrapyrrole biosynthesis I (from glutamate) TCA cycle II (plants and fungi) chloroplast thylakoid lumen malate metabolic process chloroplast photosystem II extrinsic component of membrane photosystem II oxygen evolving complex gluconeogenesis I response to light stimulus tricarboxylic acid cycle identical protein binding Ascorbate and aldarate metabolism Porphyrin and chlorophyll metabolism Photosynthesis | details |
| TreatCFM001833 | regulation of RNA biosynthetic process regulation of fatty acid beta-oxidation regulation of photorespiration AMP biosynthetic process sigma factor activity ER retention sequence binding hydrolase activity, acting on acid anhydrides adenosine kinase activity protein retention in ER lumen protein targeting to chloroplast glyoxylate cycle L-malate dehydrogenase activity ribokinase activity glyoxysome D-ribose metabolic process RNA metabolic process malate metabolic process carbohydrate phosphorylation tricarboxylic acid cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) TCA cycle II (plants and fungi) chloroplast Photosynthesis Carbon metabolism | details |
Expression profiles
 Show details about module gene expression profiling |