TreatCFM001308's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of fatty acid beta-oxidation | 0.004887091 | GO:0031998 |
| regulation of photorespiration | 0.004887091 | GO:0080093 |
| protein import into chloroplast thylakoid membrane | 0.004887091 | GO:0045038 |
| peptidyl-pyrromethane cofactor linkage | 0.005497572 | GO:0018160 |
| tetrapyrrole biosynthetic process | 0.007328471 | GO:0033014 |
| glyoxylate cycle | 0.007328471 | plantCyc |
| chloroplast envelope | 0.007329554 | GO:0009941 |
| signal recognition particle, chloroplast targeting | 0.007329554 | GO:0080085 |
| glyoxysome | 0.007329554 | GO:0009514 |
| chloroplast thylakoid membrane | 0.007329554 | GO:0009535 |
| hydroxymethylbilane synthase activity | 0.007815683 | GO:0004418 |
| L-ascorbate peroxidase activity | 0.007815683 | GO:0016688 |
| L-malate dehydrogenase activity | 0.007815683 | GO:0030060 |
| ascorbate glutathione cycle | 0.011715731 | plantCyc |
| L-ascorbate degradation V | 0.011715731 | plantCyc |
| tetrapyrrole biosynthesis I (from glutamate) | 0.011715731 | plantCyc |
| TCA cycle II (plants and fungi) | 0.012491241 | plantCyc |
| chloroplast thylakoid lumen | 0.013188323 | GO:0009543 |
| malate metabolic process | 0.018827937 | GO:0006108 |
| chloroplast | 0.019516614 | GO:0009507 |
| photosystem II | 0.019516614 | GO:0009523 |
| extrinsic component of membrane | 0.019516614 | GO:0019898 |
| photosystem II oxygen evolving complex | 0.019516614 | GO:0009654 |
| gluconeogenesis I | 0.021644566 | plantCyc |
| response to light stimulus | 0.021956191 | GO:0009416 |
| tricarboxylic acid cycle | 0.025195926 | GO:0006099 |
| identical protein binding | 0.027935932 | GO:0042802 |
| Ascorbate and aldarate metabolism | 0.032407589 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.032407589 | KEGG pathway |
| Photosynthesis | 0.045014325 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001418 | AT5G08280 (6.00E-45) | HEMC|hydroxymethylbilane synthase; RUG1|RUGOSA 1 |
| CRO_T002054 | AT2G22780 (2.00E-141) | PMDH1|peroxisomal NAD-malate dehydrogenase 1 |
| CRO_T013236 | AT4G35450 (7.00E-12) | AKR2|ankyrin repeat-containing protein 2 |
| CRO_T017324 | AT4G35970 (2.00E-14) | APX5|ascorbate peroxidase 5 |
| CRO_T019043 | AT3G55330 (3.00E-37) | PPL1|PsbP-like protein 1 |
| CRO_T026027 | AT2G43310 (2.00E-34) | Ribosomal L18p/L5e family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001485 | photosystem II oxygen evolving complex assembly protein maturation by iron-sulfur cluster transfer single-organism transport epoxide hydrolase activity ferrous iron binding Transcription_related, Transcription factor: bHLH iron-sulfur cluster assembly Photosynthesis single-organism cellular process protein transport protein transporter activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding mitochondrial matrix chloroplast part membrane part chloroplast thylakoid photosystem II | details |
| TreatCFM001724 | Cytochrome_P450, Cytochrome P450: CYP97C regulation of photorespiration regulation of fatty acid beta-oxidation zeinoxanthin epsilon hydroxylase activity heme binding L-ascorbate peroxidase activity L-malate dehydrogenase activity oxidation-reduction process glyoxylate cycle carotenoid biosynthetic process ascorbate glutathione cycle L-ascorbate degradation V lutein biosynthesis Transcription_related, Transcription factor: Orphans TCA cycle II (plants and fungi) malate metabolic process Mitophagy - yeast glyoxysome Ascorbate and aldarate metabolism Carotenoid biosynthesis chloroplast thylakoid lumen tricarboxylic acid cycle gluconeogenesis I response to oxidative stress cellular oxidant detoxification chloroplast thylakoid | details |
| TreatCFM001785 | chloroplast photosystem II oxygen evolving complex assembly regulation of pentose-phosphate shunt 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity epoxide hydrolase activity cell morphogenesis single-organism transport cytoskeleton organization gluconeogenesis glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: bHLH photosystem II oxygen evolving complex chloroplast part extrinsic component of membrane glycolytic process single-organism cellular process protein transport membrane part thylakoid actin binding protein transporter activity Photosynthesis | details |
| TreatCFM001833 | regulation of RNA biosynthetic process regulation of fatty acid beta-oxidation regulation of photorespiration AMP biosynthetic process sigma factor activity ER retention sequence binding hydrolase activity, acting on acid anhydrides adenosine kinase activity protein retention in ER lumen protein targeting to chloroplast glyoxylate cycle L-malate dehydrogenase activity ribokinase activity glyoxysome D-ribose metabolic process RNA metabolic process malate metabolic process carbohydrate phosphorylation tricarboxylic acid cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) TCA cycle II (plants and fungi) chloroplast Photosynthesis Carbon metabolism | details |
Expression profiles
 Show details about module gene expression profiling |