TreatCFM001731's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphoric ester hydrolase activity | 0.003542196 | GO:0042578 |
| peroxisome matrix targeting signal-1 binding | 0.003542196 | GO:0005052 |
| Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase | 0.006201457 | kinase family |
| 3-phosphoinositide biosynthesis | 0.007424615 | plantCyc |
| protein import into peroxisome matrix, docking | 0.008993943 | GO:0016560 |
| phosphatidylinositol-3-phosphate biosynthetic process | 0.008993943 | GO:0036092 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.009285706 | kinase family |
| vacuole organization | 0.010490142 | GO:0007033 |
| response to osmotic stress | 0.017968757 | GO:0006970 |
| peroxisomal membrane | 0.01823875 | GO:0005778 |
| Peroxisome | 0.021040139 | KEGG pathway |
| MAPK signaling pathway - plant | 0.033807088 | KEGG pathway |
| response to auxin | 0.04478671 | GO:0009733 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001806 | AT1G78290 (2.00E-126) | SNRK2-8|SNF1-RELATED PROTEIN KINASE 2-8; SNRK2.8|SNF1-RELATED PROTEIN KINASE 2.8; SRK2C|SNF1-RELATED PROTEIN KINASE 2C |
| CRO_T003310 | - | - |
| CRO_T012727 | AT5G56290 (0) | ATPEX5|ARABIDOPSIS PEROXIN 5; EMB2790|EMBRYO DEFECTIVE 2790; PEX5|peroxin 5 |
| CRO_T016097 | AT3G51630 (4.00E-121) | WNK5|with no lysine (K) kinase 5 |
| CRO_T017818 | AT2G13370 (0) | CHR5|chromatin remodeling 5 |
| CRO_T019866 | AT1G17340 (0) | Phosphoinositide phosphatase family protein |
| CRO_T028652 | AT1G18850 (9.00E-111) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001191 | glycerophosphodiester phosphodiesterase activity Circadian rhythm - plant Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Transcription_related, Transcription regulator: Pseudo ARR-B Transcription_related, Transcription regulator: Jumonji phosphorelay signal transduction system lipid metabolic process | details |
| TreatCFM001481 | Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) MAPK signaling pathway - plant protein serine/threonine kinase activity protein phosphorylation peroxisome matrix targeting signal-1 binding phosphoric ester hydrolase activity phosphatidylinositol-3-phosphate biosynthetic process protein import into peroxisome matrix, docking 3-phosphoinositide biosynthesis Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Transcription_related, Transcription factor: SBP ATP binding vacuole organization Peroxisome peroxisomal membrane response to osmotic stress response to stress response to auxin | details |
| TreatCFM001614 | ncRNA metabolic process nuclear-transcribed mRNA catabolic process mRNA catabolic process rRNA modification large ribosomal subunit rRNA binding lipase activity snoRNA binding nuclease activity Ribosome biogenesis in eukaryotes ribosomal large subunit assembly cytoplasmic translation box C/D snoRNP complex macromolecular complex rRNA processing lipid metabolic process preribosome, large subunit precursor | details |
| TreatCFM001730 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase peroxisome matrix targeting signal-1 binding protein import into peroxisome matrix, docking peroxisomal membrane maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) poly(A) RNA binding cytoplasmic translation Peroxisome response to auxin cytosolic large ribosomal subunit | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
Expression profiles
 Show details about module gene expression profiling |