TreatCFM001736's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| strigolactone biosynthetic process | 0.004431642 | GO:1901601 |
| secondary shoot formation | 0.004431642 | GO:0010223 |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.005849767 | cazy family |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.010094442 | plantCyc |
| pyrimidine ribonucleotides interconversion | 0.011666732 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.012966867 | kinase family |
| Transcription_related, Transcription factor: bZIP | 0.012966867 | TF family |
| hydrolase activity | 0.020868522 | GO:0016787 |
| nucleolus | 0.031117503 | GO:0005730 |
| intracellular part | 0.031117503 | GO:0044424 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
| Purine metabolism | 0.042841753 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002485 | AT1G03970 (1.00E-13) | GBF4|G-box binding factor 4 |
| CRO_T003031 | AT5G47750 (2.00E-162) | D6PKL2|D6 protein kinase like 2 |
| CRO_T003511 | AT3G13230 (4.00E-100) | RNA-binding KH domain-containing protein |
| CRO_T012554 | AT4G37470 (1.00E-82) | KAI2|KARRIKIN INSENSITIVE 2 |
| CRO_T019143 | AT1G14430 (2.00E-159) | glyoxal oxidase-related protein |
| CRO_T029168 | AT3G04080 (1.00E-154) | APY1|apyrase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000861 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination abscisic acid biosynthesis cellulose biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Purine metabolism microtubule-based movement cellulose biosynthetic process translational initiation | details |
| TreatCFM001898 | RIG-I-like receptor signaling pathway DNA methylation on cytosine tRNA wobble uridine modification Cysteine and methionine metabolism cytochrome-b5 reductase activity, acting on NAD(P)H nucleic acid binding Rho guanyl-nucleotide exchange factor activity nucleotide binding RNA secondary structure unwinding positive regulation of GTPase activity oxidation-reduction process | details |
| TreatCFM002041 | sphingomyelin synthase activity 7-dehydrocholesterol reductase activity Steroid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc plant sterol biosynthesis sphingolipid biosynthesis (plants) triacylglycerol degradation | details |
| TreatCFM002083 | L-glutamate biosynthesis I Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase trans-lycopene biosynthesis II (plants) 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) L-glutamine degradation I COPI vesicle coat retrograde vesicle-mediated transport, Golgi to ER protein transport | details |
Expression profiles
 Show details about module gene expression profiling |