TreatCFM002041's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sphingomyelin synthase activity | 0.002585545 | GO:0033188 |
| 7-dehydrocholesterol reductase activity | 0.002585545 | GO:0047598 |
| Steroid biosynthesis | 0.007424615 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.015210399 | cazy family |
| plant sterol biosynthesis | 0.017589695 | plantCyc |
| sphingolipid biosynthesis (plants) | 0.017589695 | plantCyc |
| triacylglycerol degradation | 0.027511335 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003511 | AT3G13230 (4.00E-100) | RNA-binding KH domain-containing protein |
| CRO_T007877 | AT5G17720 (2.00E-107) | alpha/beta-Hydrolases superfamily protein |
| CRO_T008988 | AT3G22530 (4.00E-32) | unknown protein |
| CRO_T013867 | AT3G05750 (8.00E-18) | TRM6|TON1 Recruiting Motif 6 |
| CRO_T022599 | AT2G37940 (9.00E-138) | AtIPCS2|Arabidopsis Inositol phosphorylceramide synthase 2; ERH1|enhancing RPW8-mediated HR-like cell death 1 |
| CRO_T027880 | AT1G50430 (3.00E-118) | 7RED|DELTA5,7-STEROL DELTA7 REDUCTASE; DWF5|DWARF 5; LE|LEPIDA; PA|PARVA; ST7R|STEROL DELTA7 REDUCTASE |
| CRO_T032071 | AT2G41770 (0) | Protein of unknown function (DUF288) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001351 | sphingomyelin synthase activity sphingolipid biosynthesis (plants) sulfotransferase activity | details |
| TreatCFM001448 | sphingomyelin synthase activity Insulin signaling pathway exocytosis chlorophyll a degradation II sphingolipid biosynthesis (plants) exocyst triacylglycerol degradation | details |
| TreatCFM001718 | AP-type membrane coat adaptor complex voltage-gated chloride channel activity chloride transport meristem development retrograde transport, vesicle recycling within Golgi endosomal transport Golgi vesicle prefusion complex stabilization anatomical structure morphogenesis Endocytosis Golgi transport complex regulation of anion transmembrane transport Golgi organization single-organism developmental process retrograde vesicle-mediated transport, Golgi to ER vesicle docking ion transmembrane transport exocytosis protein serine/threonine phosphatase activity | details |
| TreatCFM001736 | strigolactone biosynthetic process secondary shoot formation redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: bZIP hydrolase activity nucleolus intracellular part Plant hormone signal transduction Purine metabolism | details |
| TreatCFM001898 | RIG-I-like receptor signaling pathway DNA methylation on cytosine tRNA wobble uridine modification Cysteine and methionine metabolism cytochrome-b5 reductase activity, acting on NAD(P)H nucleic acid binding Rho guanyl-nucleotide exchange factor activity nucleotide binding RNA secondary structure unwinding positive regulation of GTPase activity oxidation-reduction process | details |
| TreatCFM002083 | L-glutamate biosynthesis I Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase trans-lycopene biosynthesis II (plants) 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) L-glutamine degradation I COPI vesicle coat retrograde vesicle-mediated transport, Golgi to ER protein transport | details |
Expression profiles
 Show details about module gene expression profiling |