TreatCFM002083's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-glutamate biosynthesis I | 0.004048762 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.005838109 | kinase family |
| trans-lycopene biosynthesis II (plants) | 0.008086762 | plantCyc |
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.008086762 | plantCyc |
| heme biosynthesis I (aerobic) | 0.008086762 | plantCyc |
| L-glutamine degradation I | 0.008086762 | plantCyc |
| COPI vesicle coat | 0.016187871 | GO:0030126 |
| retrograde vesicle-mediated transport, Golgi to ER | 0.018506477 | GO:0006890 |
| protein transport | 0.02429492 | GO:0015031 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000018 | - | - |
| CRO_T002658 | AT5G61280 (2.00E-17) | Remorin family protein |
| CRO_T003031 | AT5G47750 (2.00E-162) | D6PKL2|D6 protein kinase like 2 |
| CRO_T003511 | AT3G13230 (4.00E-100) | RNA-binding KH domain-containing protein |
| CRO_T007454 | AT1G56000 (6.00E-131) | FAD/NAD(P)-binding oxidoreductase family protein |
| CRO_T023550 | AT5G05010 (0) | clathrin adaptor complexes medium subunit family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000115 | phosphatidylethanolamine biosynthesis II | details |
| TreatCFM001736 | strigolactone biosynthetic process secondary shoot formation redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: bZIP hydrolase activity nucleolus intracellular part Plant hormone signal transduction Purine metabolism | details |
| TreatCFM001898 | RIG-I-like receptor signaling pathway DNA methylation on cytosine tRNA wobble uridine modification Cysteine and methionine metabolism cytochrome-b5 reductase activity, acting on NAD(P)H nucleic acid binding Rho guanyl-nucleotide exchange factor activity nucleotide binding RNA secondary structure unwinding positive regulation of GTPase activity oxidation-reduction process | details |
| TreatCFM002041 | sphingomyelin synthase activity 7-dehydrocholesterol reductase activity Steroid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc plant sterol biosynthesis sphingolipid biosynthesis (plants) triacylglycerol degradation | details |
Expression profiles
 Show details about module gene expression profiling |