TreatCFM001843's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| urate degradation to allantoin I | 0.000886394 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.012966867 | cazy family |
| Transcription_related, Transcription factor: MIKC | 0.012966867 | TF family |
| Transcription_related, Transcription factor: MYB-related | 0.012966867 | TF family |
| RNA secondary structure unwinding | 0.019935085 | GO:0010501 |
| rRNA processing | 0.019935085 | GO:0006364 |
| Spliceosome | 0.04413962 | KEGG pathway |
| Starch and sucrose metabolism | 0.04413962 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001255 | - | - |
| CRO_T007026 | AT5G60990 (7.00E-86) | DEA(D/H)-box RNA helicase family protein |
| CRO_T009225 | AT5G51870 (6.00E-20) | AGL71|AGAMOUS-like 71 |
| CRO_T014677 | AT1G60900 (4.00E-60) | U2 snRNP auxilliary factor, large subunit, splicing factor |
| CRO_T018277 | AT1G02850 (4.00E-112) | BGLU11|beta glucosidase 11 |
| CRO_T029935 | AT1G01380 (0.000000001) | ETC1|ENHANCER OF TRY AND CPC 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000667 | regulation of gene expression translational initiation RNA secondary structure unwinding mRNA surveillance pathway RNA transport | details |
| TreatCFM000930 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB-related glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process potassium ion binding pyruvate kinase activity | details |
| TreatCFM000931 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-Dof potassium ion binding pyruvate kinase activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process | details |
| TreatCFM001162 | Transcription_related, Transcription factor: MYB-related translational initiation RNA secondary structure unwinding regulation of gene expression RNA transport | details |
| TreatCFM002062 | Transcription_related, Transcription factor: BBR-BPC | details |
| TreatCFM002156 | L-histidine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport CDP-diacylglycerol biosynthetic process L-arginine import L-lysine transmembrane transport proline biosynthetic process phosphatidate cytidylyltransferase activity L-lysine transmembrane transporter activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity L-ornithine transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 26,27-dehydrozymosterol metabolism CDP-diacylglycerol biosynthesis II urate degradation to allantoin I aminoacyl-tRNA hydrolase activity ornithine-citrulline shuttle CDP-diacylglycerol biosynthesis I plant sterol biosynthesis Glycerophospholipid metabolism Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |