TreatCFM002156's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-histidine transmembrane transport | 0.005724871 | GO:0089709 |
| arginine transmembrane transport | 0.005724871 | GO:1903826 |
| L-ornithine transmembrane transport | 0.005724871 | GO:1903352 |
| CDP-diacylglycerol biosynthetic process | 0.005724871 | GO:0016024 |
| L-arginine import | 0.005724871 | GO:0043091 |
| L-lysine transmembrane transport | 0.005724871 | GO:1903401 |
| proline biosynthetic process | 0.005887917 | GO:0006561 |
| phosphatidate cytidylyltransferase activity | 0.006057308 | GO:0004605 |
| L-lysine transmembrane transporter activity | 0.006057308 | GO:0015189 |
| L-histidine transmembrane transporter activity | 0.006057308 | GO:0005290 |
| arginine transmembrane transporter activity | 0.006057308 | GO:0015181 |
| L-ornithine transmembrane transporter activity | 0.006057308 | GO:0000064 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.006190471 | cazy family |
| integral component of membrane | 0.006707267 | GO:0016021 |
| 26,27-dehydrozymosterol metabolism | 0.007092218 | plantCyc |
| CDP-diacylglycerol biosynthesis II | 0.007092218 | plantCyc |
| urate degradation to allantoin I | 0.007092218 | plantCyc |
| aminoacyl-tRNA hydrolase activity | 0.008074263 | GO:0004045 |
| ornithine-citrulline shuttle | 0.009114525 | plantCyc |
| CDP-diacylglycerol biosynthesis I | 0.014567734 | plantCyc |
| plant sterol biosynthesis | 0.015670819 | plantCyc |
| Glycerophospholipid metabolism | 0.034586841 | KEGG pathway |
| Starch and sucrose metabolism | 0.040489539 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000256 | - | - |
| CRO_T009735 | AT3G03790 (1.00E-15) | ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein |
| CRO_T016816 | AT5G27350 (3.00E-73) | SFP1|Major facilitator superfamily protein |
| CRO_T017050 | AT1G24480 (2.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T018277 | AT1G02850 (4.00E-112) | BGLU11|beta glucosidase 11 |
| CRO_T018939 | AT3G60620 (3.00E-54) | CDS5|cytidinediphosphate diacylglycerol synthase 5 |
| CRO_T023466 | AT4G39460 (9.00E-18) | SAMC1|S-adenosylmethionine carrier 1; SAMT1|SAM TRANSPORTER1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000930 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB-related glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process potassium ion binding pyruvate kinase activity | details |
| TreatCFM000931 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-Dof potassium ion binding pyruvate kinase activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process | details |
| TreatCFM001051 | 3-deoxy-7-phosphoheptulonate synthase activity UMP kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide phosphorylation pyrimidine nucleotide biosynthetic process aromatic amino acid family biosynthetic process RNA metabolic process 3-dehydroquinate biosynthesis I UTP and CTP de novo biosynthesis xylan biosynthesis cellulose biosynthesis pyrimidine ribonucleotides interconversion Pyrimidine metabolism Biosynthesis of amino acids | details |
| TreatCFM001079 | calcium-dependent cysteine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase L-ornithine transmembrane transporter activity asparaginase activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity sedoheptulose-bisphosphatase activity L-lysine transmembrane transporter activity early endosome membrane L-histidine transmembrane transport L-arginine import L-ornithine transmembrane transport arginine transmembrane transport L-lysine transmembrane transport proline biosynthetic process ascorbate glutathione cycle fructose 2,6-bisphosphate biosynthesis L-ascorbate degradation V L-asparagine degradation I ornithine-citrulline shuttle superpathway of aspartate and asparagine biosynthesis seed maturation proteolysis Ascorbate and aldarate metabolism sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle RNA splicing seed germination Endocytosis | details |
| TreatCFM001184 | ornithine-citrulline shuttle Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase 26,27-dehydrozymosterol metabolism L-arginine biosynthesis I (via L-ornithine) L-ascorbate degradation V UMP biosynthesis I urea cycle Ascorbate and aldarate metabolism Pyrimidine metabolism arginine transmembrane transporter activity L-histidine transmembrane transporter activity L-ornithine transmembrane transporter activity early endosome membrane ascorbate glutathione cycle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I L-lysine transmembrane transporter activity proline biosynthetic process L-arginine import L-lysine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport L-histidine transmembrane transport potassium ion transport seed maturation plant sterol biosynthesis nitrogen compound metabolic process seed germination solute:proton antiporter activity | details |
| TreatCFM001654 | protein export from nucleus nuclear export signal receptor activity protein import into nucleus Ran GTPase binding nuclear envelope | details |
| TreatCFM001777 | Betalain biosynthesis intralumenal vesicle formation protein import into chloroplast stroma cellular aromatic compound metabolic process choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases oxidoreductase activity, acting on single donors with incorporation of molecular oxygen UDP-glycosyltransferase activity | details |
| TreatCFM001843 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MIKC Transcription_related, Transcription factor: MYB-related RNA secondary structure unwinding rRNA processing Spliceosome Starch and sucrose metabolism | details |
| TreatCFM001859 | tetrapyrrole biosynthesis I (from glutamate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Phagosome microtubule-based process structural constituent of cytoskeleton beta-galactosidase activity response to stress | details |
| TreatCFM001860 | beta-galactosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc retrograde vesicle-mediated transport, Golgi to ER ER to Golgi vesicle-mediated transport SNARE interactions in vesicular transport carbohydrate binding | details |
| TreatCFM002064 | L-homoserine biosynthesis L-lysine biosynthesis VI CAF-1 complex 2-Oxocarboxylic acid metabolism tissue development phosphorylation aspartate kinase activity nucleosome assembly DNA recombination cellular amino acid biosynthetic process histone binding Ubiquitin_Proteasome_system, E3 adaptor: DWD plastoglobule | details |
| TreatCFM002100 | mitochondrion arginine transmembrane transporter activity L-ornithine transmembrane transporter activity proline-tRNA ligase activity L-histidine transmembrane transporter activity auxin binding auxin receptor activity inositol hexakisphosphate binding ornithine-citrulline shuttle EKC/KEOPS complex L-lysine transmembrane transporter activity tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation regulation of photosynthesis L-ornithine transmembrane transport L-histidine transmembrane transport arginine transmembrane transport L-arginine import adenosine ribonucleotides de novo biosynthesis L-lysine transmembrane transport proline biosynthetic process pollen maturation stamen development formation of glycosidic bonds, GlycosylTransferases: GTnc plant ovule development mitochondrial proton-transporting ATP synthase complex lateral root formation RNA splicing seed development SCF ubiquitin ligase complex embryo sac development cobalt ion binding ribosome binding chloroplast proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |