TreatCFM001858's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| succinate-CoA ligase (ADP-forming) activity | 0.003753878 | GO:0004775 |
| cyclic pyranopterin monophosphate synthase activity | 0.003753878 | GO:0061597 |
| succinate-CoA ligase (GDP-forming) activity | 0.003753878 | GO:0004776 |
| cofactor binding | 0.003753878 | GO:0048037 |
| nucleoside triphosphate biosynthetic process | 0.004581116 | GO:0009142 |
| succinyl-CoA metabolic process | 0.004581116 | GO:0006104 |
| succinate metabolic process | 0.004581116 | GO:0006105 |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.007432517 | plantCyc |
| TCA cycle II (plants and fungi) | 0.007432517 | plantCyc |
| molybdopterin cofactor biosynthetic process | 0.008587307 | GO:0032324 |
| Mo-molybdopterin cofactor biosynthetic process | 0.012361337 | GO:0006777 |
| phosphate-containing compound metabolic process | 0.014874112 | GO:0006796 |
| signal transducer activity | 0.017986692 | GO:0004871 |
| Folate biosynthesis | 0.027547372 | KEGG pathway |
| tricarboxylic acid cycle | 0.030353556 | GO:0006099 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.041052335 | ubs family |
| Inositol phosphate metabolism | 0.042058703 | KEGG pathway |
| Plant-pathogen interaction | 0.043385342 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004952 | AT5G08060 (2.00E-42) | unknown protein |
| CRO_T011592 | - | - |
| CRO_T023093 | AT5G22870 (5.00E-17) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T024693 | AT5G63980 (2.00E-123) | ALX8|ALTERED EXPRESSION OF APX2 8; FRY1|FIERY1; HOS2|HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2; RON1|ROTUNDA 1; SUPO1|suppressors of PIN1 overexpression 1 |
| CRO_T025624 | AT1G01290 (1.00E-47) | CNX3|cofactor of nitrate reductase and xanthine dehydrogenase 3 |
| CRO_T026658 | AT4G03290 (1.00E-23) | EF hand calcium-binding protein family |
| CRO_T029301 | AT5G08300 (1.00E-148) | Succinyl-CoA ligase, alpha subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001545 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process succinate-CoA ligase (ADP-forming) activity cofactor binding succinate-CoA ligase (GDP-forming) activity coniferin metabolism TCA cycle II (plants and fungi) tricarboxylic acid cycle proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport mitochondrial matrix mitochondrial inner membrane | details |
| TreatCFM001546 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process Transcription_related, Transcription factor: DBP succinate-CoA ligase (GDP-forming) activity succinate-CoA ligase (ADP-forming) activity cofactor binding coniferin metabolism TCA cycle II (plants and fungi) xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc cation binding tricarboxylic acid cycle mitochondrial matrix phosphoprotein phosphatase activity helicase activity | details |
| TreatCFM001780 | Calcium signaling pathway RNA polymerase III core binding voltage-gated anion channel activity negative regulation of transcription from RNA polymerase III promoter transcription factor TFIIIB complex assembly anion transport transcription, DNA-templated regulation of anion transmembrane transport retrograde vesicle-mediated transport, Golgi to ER transferase activity, transferring acyl groups other than amino-acyl groups mitochondrial outer membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001782 | translation initiation factor binding formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport Transcriptional misregulation in cancers microtubule cytoskeleton cytoskeletal part cytokinesis by cell plate formation Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM002015 | Glucagon signaling pathway mucilage biosynthetic process involved in seed coat development positive regulation of kinase activity maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular response to stress regulation of translation plasmodesma PeBoW complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of protein kinase activity vesicle docking involved in exocytosis ribonucleoprotein complex binding protein kinase regulator activity Ubiquitin_Proteasome_system, E2: UBC nucleoplasm preribosome, large subunit precursor exocyst protein kinase binding ribosome binding signal transducer activity nucleotidyltransferase activity phosphoprotein phosphatase activity protein transport DNA replication | details |
Expression profiles
 Show details about module gene expression profiling |