TreatCFM001780's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Calcium signaling pathway | 0.003776977 | KEGG pathway |
| RNA polymerase III core binding | 0.007878474 | GO:0000994 |
| voltage-gated anion channel activity | 0.0088587 | GO:0008308 |
| negative regulation of transcription from RNA polymerase III promoter | 0.012035495 | GO:0016480 |
| transcription factor TFIIIB complex assembly | 0.012035495 | GO:0070217 |
| anion transport | 0.016536827 | GO:0006820 |
| transcription, DNA-templated | 0.016536827 | GO:0006351 |
| regulation of anion transmembrane transport | 0.019026658 | GO:1903959 |
| retrograde vesicle-mediated transport, Golgi to ER | 0.019026658 | GO:0006890 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.033971022 | GO:0016747 |
| mitochondrial outer membrane | 0.034722514 | GO:0005741 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.046777058 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000982 | AT5G13240 (4.00E-53) | transcription regulators |
| CRO_T007462 | AT2G45140 (5.00E-61) | PVA12|plant VAP homolog 12 |
| CRO_T011592 | - | - |
| CRO_T013797 | AT3G01280 (2.00E-59) | ATVDAC1|VOLTAGE DEPENDENT ANION CHANNEL 1 |
| CRO_T015544 | AT5G38840 (3.00E-17) | SMAD/FHA domain-containing protein |
| CRO_T016352 | AT4G21470 (5.00E-13) | ATFMN/FHY|riboflavin kinase/FMN hydrolase |
| CRO_T027577 | AT5G55350 (1.00E-42) | MBOAT (membrane bound O-acyl transferase) family protein |
| CRO_T030757 | AT4G39220 (4.00E-54) | ATRER1A|Rer1 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001385 | sulfoquinovosyl diacylglycerol biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc RNA polymerase III core binding transcription factor TFIIIB complex assembly negative regulation of transcription from RNA polymerase III promoter vacuolar acidification proton-transporting ATPase activity, rotational mechanism ATP hydrolysis coupled proton transport MAPK signaling pathway Glycerolipid metabolism vacuolar proton-transporting V-type ATPase, V0 domain | details |
| TreatCFM001657 | endosome trans-Golgi network UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) UDP-sugars interconversion intracellular integral component of membrane Transcription_related, Transcription factor: HB Amino sugar and nucleotide sugar metabolism racemase and epimerase activity, acting on carbohydrates and derivatives calcium-mediated signaling retrograde vesicle-mediated transport, Golgi to ER | details |
| TreatCFM001782 | translation initiation factor binding formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport Transcriptional misregulation in cancers microtubule cytoskeleton cytoskeletal part cytokinesis by cell plate formation Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001858 | succinate-CoA ligase (ADP-forming) activity cyclic pyranopterin monophosphate synthase activity succinate-CoA ligase (GDP-forming) activity cofactor binding nucleoside triphosphate biosynthetic process succinyl-CoA metabolic process succinate metabolic process D-myo-inositol (1,4,5)-trisphosphate degradation TCA cycle II (plants and fungi) molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor biosynthetic process phosphate-containing compound metabolic process signal transducer activity Folate biosynthesis tricarboxylic acid cycle Ubiquitin_Proteasome_system, E3 adaptor: DWD Inositol phosphate metabolism Plant-pathogen interaction | details |
| TreatCFM002053 | transcription factor TFIIIB complex assembly negative regulation of transcription from RNA polymerase III promoter RNA polymerase III core binding DNA conformation change DNA topoisomerase activity vacuolar proton-transporting V-type ATPase complex transcription, DNA-templated adenosine ribonucleotides de novo biosynthesis hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances protein complex DNA metabolic process proton transport heterocyclic compound binding organic cyclic compound binding cytoplasm nucleus cytoplasmic part Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |