TreatCFM002015's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Glucagon signaling pathway | 0.005687189 | KEGG pathway |
| mucilage biosynthetic process involved in seed coat development | 0.00706193 | GO:0048354 |
| positive regulation of kinase activity | 0.00706193 | GO:0033674 |
| maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00706193 | GO:0000466 |
| cellular response to stress | 0.00706193 | GO:0033554 |
| regulation of translation | 0.009414237 | GO:0006417 |
| plasmodesma | 0.009852013 | GO:0009506 |
| PeBoW complex | 0.009852013 | GO:0070545 |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.012099726 | GO:0000463 |
| regulation of protein kinase activity | 0.012099726 | GO:0045859 |
| vesicle docking involved in exocytosis | 0.014112593 | GO:0006904 |
| ribonucleoprotein complex binding | 0.018175147 | GO:0043021 |
| protein kinase regulator activity | 0.024222788 | GO:0019887 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.025356195 | ubs family |
| nucleoplasm | 0.027329416 | GO:0005654 |
| preribosome, large subunit precursor | 0.027329416 | GO:0030687 |
| exocyst | 0.027329416 | GO:0000145 |
| protein kinase binding | 0.030232885 | GO:0019901 |
| ribosome binding | 0.030232885 | GO:0043022 |
| signal transducer activity | 0.030232885 | GO:0004871 |
| nucleotidyltransferase activity | 0.034236611 | GO:0016779 |
| phosphoprotein phosphatase activity | 0.038802003 | GO:0004721 |
| protein transport | 0.046883785 | GO:0015031 |
| DNA replication | 0.046883785 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008075 | AT2G42810 (1.00E-43) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T009156 | AT1G64790 (2.00E-26) | ILA|ILITYHIA |
| CRO_T009416 | AT3G10380 (7.00E-44) | ATSEC8|SUBUNIT OF EXOCYST COMPLEX 8 |
| CRO_T009917 | AT1G50840 (0) | POLGAMMA2|polymerase gamma 2; PolIA|polymerase I A |
| CRO_T023093 | AT5G22870 (5.00E-17) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T023452 | - | - |
| CRO_T025046 | AT2G46030 (9.00E-24) | UBC6|ubiquitin-conjugating enzyme 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001722 | fumarylacetoacetase activity aromatic amino acid family metabolic process HAUS complex spindle microtubule spindle assembly microtubule minus-end binding Tyrosine metabolism Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM001774 | Glucagon signaling pathway [2Fe-2S] cluster assembly protein export from nucleus cellular iron ion homeostasis alkane biosynthetic process RNA polymerase II transcriptional preinitiation complex assembly protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process histone acetyltransferase binding transcription factor binding nuclear export signal receptor activity iron-sulfur transferase activity ferrous iron binding Basal transcription factors transcription factor TFIID complex transcription coactivator activity transcription regulatory region DNA binding protein import into nucleus Ran GTPase binding nuclear envelope 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding regulation of transcription from RNA polymerase II promoter mitochondrial matrix embryo development ending in seed dormancy protein dephosphorylation | details |
| TreatCFM001858 | succinate-CoA ligase (ADP-forming) activity cyclic pyranopterin monophosphate synthase activity succinate-CoA ligase (GDP-forming) activity cofactor binding nucleoside triphosphate biosynthetic process succinyl-CoA metabolic process succinate metabolic process D-myo-inositol (1,4,5)-trisphosphate degradation TCA cycle II (plants and fungi) molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor biosynthetic process phosphate-containing compound metabolic process signal transducer activity Folate biosynthesis tricarboxylic acid cycle Ubiquitin_Proteasome_system, E3 adaptor: DWD Inositol phosphate metabolism Plant-pathogen interaction | details |
| TreatCFM002017 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway protein export from nucleus response to sucrose protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly aspartate family amino acid biosynthetic process phosphorylation alkane biosynthetic process iron-sulfur transferase activity nuclear export signal receptor activity aspartate kinase activity ferrous iron binding homoserine dehydrogenase activity Apelin signaling pathway protein import into nucleus cellular amino acid biosynthetic process Ran GTPase binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding amino acid binding phosphoprotein phosphatase activity NADP binding Biosynthesis of amino acids nuclear envelope | details |
| TreatCFM002018 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cellular iron ion homeostasis cellular response to nitrogen levels response to sucrose [2Fe-2S] cluster assembly protein maturation by iron-sulfur cluster transfer iron-sulfur transferase activity Apelin signaling pathway core mediator complex mediator complex mitochondrial matrix ferrous iron binding ribosomal large subunit assembly RNA polymerase II transcription cofactor activity cytosolic large ribosomal subunit regulation of transcription from RNA polymerase II promoter 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding | details |
| TreatCFM002019 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cuticle hydrocarbon biosynthetic process protein maturation by iron-sulfur cluster transfer cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly response to sucrose alkane biosynthetic process iron-sulfur transferase activity Apelin signaling pathway mitochondrial matrix ferrous iron binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity | details |
Expression profiles
 Show details about module gene expression profiling |