TreatCFM001890's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nonphotochemical quenching | 0.003412919 | GO:0010196 |
| integral component of membrane | 0.006707267 | GO:0016021 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.015210399 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003037 | AT5G15790 (5.00E-22) | RING/U-box superfamily protein |
| CRO_T006289 | AT2G38695 (1.00E-07) | unknown protein |
| CRO_T007839 | AT1G34550 (4.00E-172) | EMB2756|EMBRYO DEFECTIVE 2756 |
| CRO_T013708 | AT1G33980 (2.00E-06) | ATUPF3; UPF3|Smg-4/UPF3 family protein |
| CRO_T018059 | AT2G32060 (9.00E-44) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T019712 | AT5G43050 (7.00E-37) | NPQ6|NONPHOTOCHEMICAL QUENCHING 6 |
| CRO_T019819 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000136 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity macromolecule depalmitoylation regulation of vesicle fusion biological regulation activation of GTPase activity Rab GTPase binding GTPase activator activity RNA secondary structure unwinding Fatty acid metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD fatty acid biosynthetic process | details |
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | details |
| TreatCFM000866 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity suberin biosynthetic process macromolecule depalmitoylation biological regulation | details |
| TreatCFM001276 | polyamine catabolic process polyamine oxidase activity spermine and spermidine degradation III Arginine and proline metabolism flavin adenine dinucleotide binding peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001347 | nuclear ubiquitin ligase complex Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) positive regulation of translational elongation organ senescence detection of nutrient vegetative phase change translational frameshifting positive regulation of translational termination developmental process involved in reproduction sugar mediated signaling pathway primary root development Apelin signaling pathway RNA degradation abscisic acid-activated signaling pathway translational initiation | details |
| TreatCFM001486 | integral component of chloroplast outer membrane cation transport RNA secondary structure unwinding ER to Golgi vesicle-mediated transport ion transmembrane transport ion channel activity chloroplast inner membrane | details |
| TreatCFM001853 | pyruvate decarboxylation to acetyl CoA Ubiquitin_Proteasome_system, E3 adaptor: DWD drug transmembrane transporter activity protein binding transferase activity, transferring acyl groups antiporter activity biological regulation | details |
Expression profiles
 Show details about module gene expression profiling |