TreatCFM001893's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP721A | 0.001595745 | CYP450 family |
| brassinosteroids inactivation | 0.004778752 | plantCyc |
| Proteasome | 0.008130157 | KEGG pathway |
| proteasome assembly | 0.010339733 | GO:0043248 |
| polyubiquitin binding | 0.013542933 | GO:0031593 |
| proteasome regulatory particle, base subcomplex | 0.022143477 | GO:0008540 |
| Transcription_related, Transcription factor: MYB | 0.024045297 | TF family |
| small GTPase mediated signal transduction | 0.032842763 | GO:0007264 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.032842763 | GO:0043161 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010055 | AT1G31800 (7.00E-27) | CYP97A3|cytochrome P450, family 97, subfamily A, polypeptide 3; LUT5|LUTEIN DEFICIENT 5 |
| CRO_T013567 | AT3G55730 (1.00E-71) | AtMYB109|myb domain protein 109 |
| CRO_T026586 | AT5G60860 (2.00E-64) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T026754 | AT4G38630 (5.00E-107) | MBP1|MULTIUBIQUITIN CHAIN BINDING PROTEIN 1; MCB1|MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1; RPN10|regulatory particle non-ATPase 10 |
| CRO_T026789 | AT5G07710 (1.00E-146) | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| CRO_T030106 | AT3G32940 (7.00E-59) | RNA-binding KH domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001025 | oxidation-reduction process acetaldehyde biosynthesis I pyruvate fermentation to ethanol II oxidoreductase activity Phenylpropanoid biosynthesis zinc ion binding salicylate glucosides biosynthesis II farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II detoxification of reactive carbonyls in chloroplasts quercetin glucoside biosynthesis (Allium) traumatin and (Z)-3-hexen-1-yl acetate biosynthesis quercetin gentiotetraside biosynthesis UDP-glucosyltransferase activity | details |
| TreatCFM001391 | Cytochrome_P450, Cytochrome P450: CYP720A MAPK signaling pathway enzyme-directed rRNA pseudouridine synthesis negative regulation of chlorophyll biosynthetic process chloroplast-nucleus signaling pathway cotyledon vascular tissue pattern formation red or far-red light signaling pathway mitochondrial RNA metabolic process chloroplast RNA modification reactive oxygen species metabolic process cation transport leaf vascular tissue pattern formation alkaloid metabolic process RNA modification phloem or xylem histogenesis | details |
| TreatCFM001508 | triose-phosphate isomerase activity oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor glycerol catabolic process enzyme-directed rRNA pseudouridine synthesis glyceraldehyde-3-phosphate biosynthetic process deaminase activity pseudouridine synthase activity solute:proton antiporter activity cation transport gluconeogenesis pentose-phosphate shunt Calvin-Benson-Bassham cycle gluconeogenesis I glucose and glucose-1-phosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) quinone binding glycolytic process Carbon metabolism | details |
| TreatCFM001743 | peptide alpha-N-acetyltransferase activity N-terminal protein amino acid acetylation Transcription_related, Transcription regulator: GNAT phosphatidate metabolism, as a signaling molecule Glycerolipid metabolism chloroplast inner membrane protein acetyltransferase complex | details |
| TreatCFM002105 | outer membrane enzyme-directed rRNA pseudouridine synthesis pseudouridine synthase activity deaminase activity Transcription_related, Transcription factor: ERF | details |
| TreatCFM002141 | NADP biosynthetic process phosphorylation NAD metabolic process isopentenyl diphosphate biosynthetic process, mevalonate pathway heme biosynthetic process diphosphomevalonate decarboxylase activity NAD+ kinase activity Indole alkaloid biosynthesis Nicotinate and nicotinamide metabolism heme biosynthesis I (aerobic) mevalonate pathway I 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) ajmaline and sarpagine biosynthesis NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription factor: MYB chloroplast part Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis | details |
| TreatCFM002167 | Cytochrome_P450, Cytochrome P450: CYP721A glucose and glucose-1-phosphate degradation brassinosteroids inactivation Proteasome polyubiquitin binding oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor proteasome assembly Transcription_related, Transcription factor: ERF proteasome regulatory particle, base subcomplex | details |
Expression profiles
 Show details about module gene expression profiling |