TreatCFM002141's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| NADP biosynthetic process | 0.003081065 | GO:0006741 |
| phosphorylation | 0.003081065 | GO:0016310 |
| NAD metabolic process | 0.003081065 | GO:0019674 |
| isopentenyl diphosphate biosynthetic process, mevalonate pathway | 0.003081065 | GO:0019287 |
| heme biosynthetic process | 0.003126966 | GO:0006783 |
| diphosphomevalonate decarboxylase activity | 0.006435695 | GO:0004163 |
| NAD+ kinase activity | 0.006435695 | GO:0003951 |
| Indole alkaloid biosynthesis | 0.009596925 | KEGG pathway |
| Nicotinate and nicotinamide metabolism | 0.009596925 | KEGG pathway |
| heme biosynthesis I (aerobic) | 0.013147787 | plantCyc |
| mevalonate pathway I | 0.013147787 | plantCyc |
| 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | 0.013477937 | plantCyc |
| ajmaline and sarpagine biosynthesis | 0.013733283 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.013733283 | plantCyc |
| Transcription_related, Transcription factor: MYB | 0.016030198 | TF family |
| chloroplast part | 0.018506477 | GO:0044434 |
| Porphyrin and chlorophyll metabolism | 0.019138625 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.019138625 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002325 | AT3G21070 (6.00E-52) | ATNADK-1|NAD KINASE 1 |
| CRO_T011515 | AT3G54250 (0) | GHMP kinase family protein |
| CRO_T013567 | AT3G55730 (1.00E-71) | AtMYB109|myb domain protein 109 |
| CRO_T017506 | AT4G01690 (1.00E-101) | HEMG1; PPO1; PPOX|Flavin containing amine oxidoreductase family |
| CRO_T030883 | AT2G23610 (2.00E-54) | ATMES3|METHYL ESTERASE 3 |
| CRO_T031265 | AT5G48410 (4.00E-109) | ATGLR1.3|GLUTAMATE RECEPTOR 1.3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM001215 | glycolytic process sucrose biosynthesis I (from photosynthesis) gluconeogenesis I glycolysis I (from glucose 6-phosphate) gluconeogenesis glucose-6-phosphate isomerase activity phosphatidate phosphatase activity fructose-bisphosphate aldolase activity Carbon metabolism Indole alkaloid biosynthesis GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis II ajmaline and sarpagine biosynthesis Calvin-Benson-Bassham cycle diacylglycerol and triacylglycerol biosynthesis glycolysis IV (plant cytosol) Glycerolipid metabolism Ribosome biogenesis in eukaryotes | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001686 | UDP-glucose transmembrane transporter activity dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity UDP-galactose transmembrane transporter activity dolichyl-phosphate-mannose-protein mannosyltransferase activity lateral root development UDP-glucose transport heme biosynthetic process photosystem II stabilization root hair cell development UDP-galactose transmembrane transport dolichol metabolic process protein O-linked mannosylation cell morphogenesis cytoskeleton organization GPI anchor biosynthetic process protein N-linked glycosylation Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc N-Glycan biosynthesis Porphyrin and chlorophyll metabolism actin binding chloroplast part | details |
| TreatCFM001893 | Cytochrome_P450, Cytochrome P450: CYP721A brassinosteroids inactivation Proteasome proteasome assembly polyubiquitin binding proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: MYB small GTPase mediated signal transduction proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM002151 | formation of glycosidic bonds, GlycosylTransferases: GTnc dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity dolichol metabolic process singlet oxygen-mediated programmed cell death protein O-linked mannosylation hydrolase activity tetrapyrrole biosynthesis I (from glutamate) xylan biosynthesis protein N-glycosylation (eukaryotic, high mannose) Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis protein N-linked glycosylation GPI anchor biosynthetic process cellulose synthase (UDP-forming) activity thylakoid membrane N-Glycan biosynthesis unfolded protein binding cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |