TreatCFM001903's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: ARR-B | 0.001240768 | TF family |
| positive regulation of chromatin silencing | 0.003836572 | GO:0031937 |
| positive regulation of histone H3-K27 methylation | 0.003836572 | GO:0061087 |
| heterochromatin maintenance | 0.003836572 | GO:0070829 |
| regulation of mRNA polyadenylation | 0.003836572 | GO:1900363 |
| leaf pavement cell development | 0.003836572 | GO:0090436 |
| regulation of DNA methylation | 0.004110309 | GO:0044030 |
| positive regulation of histone H3-K9 dimethylation | 0.004110309 | GO:1900111 |
| L-valine degradation I | 0.004425424 | plantCyc |
| regulation of leaf development | 0.010650846 | GO:2000024 |
| positive regulation of flower development | 0.010650846 | GO:0009911 |
| Autophagy - yeast | 0.013806304 | KEGG pathway |
| vegetative to reproductive phase transition of meristem | 0.021761688 | GO:0010228 |
| defense response to fungus | 0.021761688 | GO:0050832 |
| phosphorelay signal transduction system | 0.028702093 | GO:0000160 |
| nucleus | 0.037461816 | GO:0005634 |
| endomembrane system | 0.037461816 | GO:0012505 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000047 | AT2G37480 (4.00E-08) | unknown protein |
| CRO_T002730 | AT2G28390 (0) | SAND family protein |
| CRO_T009953 | AT2G01870 (5.00E-17) | unknown protein |
| CRO_T025130 | AT2G25180 (6.00E-97) | ARR12|response regulator 12 |
| CRO_T026410 | AT5G55390 (2.00E-110) | EDM2|ENHANCED DOWNY MILDEW 2 |
| CRO_T026845 | AT1G42960 (3.00E-32) | expressed protein localized to the inner membrane of the chloroplast. |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000867 | benzoate biosynthesis I (CoA-dependent, β-oxidative) Oxidative phosphorylation | details |
| TreatCFM001182 | carboxypeptidase activity benzoate biosynthesis I (CoA-dependent, β-oxidative) | details |
| TreatCFM001520 | L-arginine biosynthesis I (via L-ornithine) urea cycle positive regulation of histone H3-K27 methylation leaf pavement cell development regulation of mRNA polyadenylation regulation of DNA methylation positive regulation of chromatin silencing arginine biosynthetic process via ornithine heterochromatin maintenance positive regulation of histone H3-K9 dimethylation L-arginine biosynthesis II (acetyl cycle) protein tetramerization argininosuccinate lyase activity regulation of leaf development positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process positive regulation of flower development formation of glycosidic bonds, GlycosylTransferases: GTnc ER-associated ubiquitin-dependent protein catabolic process defense response to fungus vegetative to reproductive phase transition of meristem TBP-class protein binding proteasome-activating ATPase activity nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex Proteasome Biosynthesis of amino acids signal transduction | details |
| TreatCFM001521 | L-arginine biosynthesis I (via L-ornithine) urea cycle leaf pavement cell development positive regulation of histone H3-K27 methylation regulation of mRNA polyadenylation regulation of DNA methylation positive regulation of chromatin silencing arginine biosynthetic process via ornithine heterochromatin maintenance positive regulation of histone H3-K9 dimethylation argininosuccinate lyase activity L-arginine biosynthesis II (acetyl cycle) protein tetramerization condensed chromosome outer kinetochore chromosome segregation regulation of leaf development positive regulation of flower development spindle microtubule Autophagy - yeast vegetative to reproductive phase transition of meristem defense response to fungus Biosynthesis of amino acids cell division vesicle-mediated transport signal transduction | details |
| TreatCFM001969 | Autophagy - yeast condensed chromosome outer kinetochore chromosome segregation spindle microtubule phragmoplast cell division vesicle-mediated transport | details |
| TreatCFM002069 | heterochromatin maintenance leaf pavement cell development regulation of mRNA polyadenylation positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation regulation of DNA methylation positive regulation of histone H3-K9 dimethylation Proteasome positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of flower development positive regulation of proteasomal protein catabolic process regulation of leaf development formation of glycosidic bonds, GlycosylTransferases: GTnc cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process vegetative to reproductive phase transition of meristem defense response to fungus TBP-class protein binding proteasome-activating ATPase activity single-organism process chloroplast thylakoid | details |
| TreatCFM002120 | vesicle-mediated transport endopeptidase activity enzyme regulator activity regulation of protein catabolic process intracellular transport proteasome storage granule proteasome regulatory particle, base subcomplex membrane coat Transcription_related, Transcription factor: bHLH Autophagy - yeast Lysosome Proteasome regulation of catalytic activity protein transport proteasome-mediated ubiquitin-dependent protein catabolic process endomembrane system cellular process | details |
Expression profiles
 Show details about module gene expression profiling |