TreatCFM002120's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| vesicle-mediated transport | 0.001243003 | GO:0016192 |
| endopeptidase activity | 0.004431642 | GO:0004175 |
| enzyme regulator activity | 0.004431642 | GO:0030234 |
| regulation of protein catabolic process | 0.007506646 | GO:0042176 |
| intracellular transport | 0.007506646 | GO:0046907 |
| proteasome storage granule | 0.007819149 | GO:0034515 |
| proteasome regulatory particle, base subcomplex | 0.013020365 | GO:0008540 |
| membrane coat | 0.013020365 | GO:0030117 |
| Transcription_related, Transcription factor: bHLH | 0.014279181 | TF family |
| Autophagy - yeast | 0.014905288 | KEGG pathway |
| Lysosome | 0.014905288 | KEGG pathway |
| Proteasome | 0.014905288 | KEGG pathway |
| regulation of catalytic activity | 0.029692601 | GO:0050790 |
| protein transport | 0.03045008 | GO:0015031 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.03045008 | GO:0043161 |
| endomembrane system | 0.041514609 | GO:0012505 |
| cellular process | 0.044284868 | GO:0009987 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002730 | AT2G28390 (0) | SAND family protein |
| CRO_T005969 | AT5G23390 (0) | Plant protein of unknown function (DUF639) |
| CRO_T008216 | AT1G73170 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T016955 | AT1G32230 (5.00E-78) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T020822 | AT1G04810 (0) | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit |
| CRO_T025650 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001521 | L-arginine biosynthesis I (via L-ornithine) urea cycle leaf pavement cell development positive regulation of histone H3-K27 methylation regulation of mRNA polyadenylation regulation of DNA methylation positive regulation of chromatin silencing arginine biosynthetic process via ornithine heterochromatin maintenance positive regulation of histone H3-K9 dimethylation argininosuccinate lyase activity L-arginine biosynthesis II (acetyl cycle) protein tetramerization condensed chromosome outer kinetochore chromosome segregation regulation of leaf development positive regulation of flower development spindle microtubule Autophagy - yeast vegetative to reproductive phase transition of meristem defense response to fungus Biosynthesis of amino acids cell division vesicle-mediated transport signal transduction | details |
| TreatCFM001791 | condensed chromosome outer kinetochore spindle microtubule chromosome segregation cell division vesicle fusion exocytosis SNARE complex SNARE binding SNAP receptor activity microtubule binding transporter activity | details |
| TreatCFM001903 | Transcription_related, Transcription factor: ARR-B positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation heterochromatin maintenance regulation of mRNA polyadenylation leaf pavement cell development regulation of DNA methylation positive regulation of histone H3-K9 dimethylation L-valine degradation I regulation of leaf development positive regulation of flower development Autophagy - yeast vegetative to reproductive phase transition of meristem defense response to fungus phosphorelay signal transduction system nucleus endomembrane system Plant hormone signal transduction | details |
| TreatCFM001969 | Autophagy - yeast condensed chromosome outer kinetochore chromosome segregation spindle microtubule phragmoplast cell division vesicle-mediated transport | details |
| TreatCFM002137 | Ubiquitin_Proteasome_system, DUB: USP oxidoreductase activity, acting on peroxide as acceptor antioxidant activity Ras signaling pathway maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular protein metabolic process cytoplasmic translation cysteine-type peptidase activity poly(A) RNA binding metal ion binding small GTPase mediated signal transduction | details |
| TreatCFM002143 | cytosol Sec61 translocon complex aldose 1-epimerase activity intracellular transport hexose metabolic process positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation COP9 signalosome membrane coat Thyroid hormone signaling pathway proteasome complex Transcription_related, Transcription factor: MYB Glycolysis / Gluconeogenesis Lysosome Protein export protein transporter activity | details |
Expression profiles
 Show details about module gene expression profiling |