TreatCFM000867's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.011120806 | plantCyc |
| Oxidative phosphorylation | 0.043012277 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007590 | AT5G24810 (5.00E-151) | ABC1 family protein |
| CRO_T017015 | - | - |
| CRO_T022670 | AT1G30130 (3.00E-109) | unknown protein |
| CRO_T026845 | AT1G42960 (3.00E-32) | expressed protein localized to the inner membrane of the chloroplast. |
| CRO_T028188 | - | - |
| CRO_T028841 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000083 | vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity raucaffricine beta-glucosidase activity alkaloid biosynthetic process Transcription_related, Transcription factor: NAC Starch and sucrose metabolism | details |
| TreatCFM000190 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) copper uptake transmembrane transporter activity ureidoglycine aminohydrolase activity purine nucleobase catabolic process protein import into chloroplast stroma allantoin catabolic process cellular metal ion homeostasis ureide catabolic process copper ion transmembrane transport chloroplast inner membrane protein homodimerization activity Purine metabolism | details |
| TreatCFM000197 | Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000258 | Amino sugar and nucleotide sugar metabolism Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity chitinase activity chitin binding chitin catabolic process | details |
| TreatCFM000301 | vindoline and vinblastine biosynthesis mRNA surveillance pathway | details |
| TreatCFM000441 | alliin lyase activity Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Wnt signaling pathway | details |
| TreatCFM000470 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000477 | details | |
| TreatCFM000507 | ureidoglycine aminohydrolase activity purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) Transcription_related, Transcription factor: FAR1 Purine metabolism | details |
| TreatCFM000509 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase guiding stereospecific synthesis activity regulation of catalytic activity phenylpropanoid biosynthetic process | details |
| TreatCFM000598 | histidine phosphotransfer kinase activity carbon-sulfur lyase activity protein histidine kinase binding cytokinin-activated signaling pathway phosphorelay signal transduction system | details |
| TreatCFM000742 | U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic 3'-5'-exoribonuclease activity peptidyl-serine phosphorylation | details |
| TreatCFM000760 | details | |
| TreatCFM000763 | details | |
| TreatCFM000767 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase protein serine/threonine/tyrosine kinase activity protein kinase activity magnesium ion transport magnesium ion transmembrane transport ATP binding magnesium ion transmembrane transporter activity protein phosphorylation | details |
| TreatCFM000990 | response to sucrose negative regulation of cell aging regulation of nucleic acid-templated transcription Noc complex vesicle negative regulation of flower development nuclear lumen protein targeting to vacuole vegetative to reproductive phase transition of meristem transcription cofactor activity preribosome, large subunit precursor dioxygenase activity | details |
| TreatCFM001182 | carboxypeptidase activity benzoate biosynthesis I (CoA-dependent, β-oxidative) | details |
| TreatCFM001183 | details | |
| TreatCFM001277 | oxidoreductase activity, acting on NAD(P)H 3'-5' exonuclease activity DNA-directed DNA polymerase activity DNA biosynthetic process nucleic acid phosphodiester bond hydrolysis DNA replication Oxidative phosphorylation | details |
| TreatCFM001903 | Transcription_related, Transcription factor: ARR-B positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation heterochromatin maintenance regulation of mRNA polyadenylation leaf pavement cell development regulation of DNA methylation positive regulation of histone H3-K9 dimethylation L-valine degradation I regulation of leaf development positive regulation of flower development Autophagy - yeast vegetative to reproductive phase transition of meristem defense response to fungus phosphorelay signal transduction system nucleus endomembrane system Plant hormone signal transduction | details |
| TreatCFM002069 | heterochromatin maintenance leaf pavement cell development regulation of mRNA polyadenylation positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation regulation of DNA methylation positive regulation of histone H3-K9 dimethylation Proteasome positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of flower development positive regulation of proteasomal protein catabolic process regulation of leaf development formation of glycosidic bonds, GlycosylTransferases: GTnc cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process vegetative to reproductive phase transition of meristem defense response to fungus TBP-class protein binding proteasome-activating ATPase activity single-organism process chloroplast thylakoid | details |
| TreatCFM002107 | RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly Transcription_related, Transcription regulator: MED6 RNA polymerase II transcriptional preinitiation complex assembly core mediator complex benzoate biosynthesis I (CoA-dependent, β-oxidative) regulation of transcription from RNA polymerase II promoter mediator complex | details |
Expression profiles
 Show details about module gene expression profiling |