TreatCFM001946's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| iron reduction and absorption | 0.001417916 | plantCyc |
| cellular metabolic process | 0.014598507 | GO:0044237 |
| organic substance metabolic process | 0.014598507 | GO:0071704 |
| MAPK signaling pathway - plant | 0.01934999 | KEGG pathway |
| cation binding | 0.026295574 | GO:0043169 |
| cytoplasmic part | 0.041785998 | GO:0044444 |
| phosphoprotein phosphatase activity | 0.045404097 | GO:0004721 |
| intracellular membrane-bounded organelle | 0.04725057 | GO:0043231 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005974 | AT4G31750 (4.00E-34) | WIN2|HOPW1-1-interacting 2 |
| CRO_T017063 | AT1G48420 (4.00E-89) | ACD1|1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; ATACD1|A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; D-CDES|D-cysteine desulfhydrase |
| CRO_T022826 | AT4G22753 (1.00E-24) | SMO1-3|sterol 4-alpha methyl oxidase 1-3 |
| CRO_T026234 | AT1G01580 (2.00E-165) | ATFRO2|FERRIC REDUCTION OXIDASE 2; FRD1|FERRIC CHELATE REDUCTASE DEFECTIVE 1 |
| CRO_T030593 | AT4G39740 (4.00E-79) | HCC2|homologue of copper chaperone SCO1 2 |
| CRO_T033585 | AT4G00905 (2.00E-79) | NC domain-containing protein-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000982 | D-myo-inositol-5-phosphate metabolism phytate degradation I Transcription_related, Transcription regulator: PHD peptidyl-tyrosine dephosphorylation Glycolysis / Gluconeogenesis Inositol phosphate metabolism Plant-pathogen interaction protein tyrosine phosphatase activity acid phosphatase activity dephosphorylation | details |
| TreatCFM001518 | Cytochrome_P450, Cytochrome P450: CYP81K Transcription_related, Transcription factor: STAT UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) Cytochrome_P450, Cytochrome P450: CYP81D D-galactose degradation III stachyose degradation UDP-sugars interconversion sesamin biosynthesis Galactose metabolism box C/D snoRNP complex indole glucosinolate metabolic process defense response to other organism rRNA modification galactose metabolic process Ribosome biogenesis in eukaryotes organic substance metabolic process cellular metabolic process UDP-glucose 4-epimerase activity signal transducer activity snoRNA binding secondary metabolite biosynthetic process signal transduction | details |
| TreatCFM001571 | rRNA modification box C/D snoRNP complex snoRNA binding Ribosome biogenesis in eukaryotes small-subunit processome UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) D-galactose degradation III UDP-glucose 4-epimerase activity Galactose metabolism stachyose degradation UDP-sugars interconversion galactose metabolic process organic substance metabolic process cellular metabolic process transmembrane transporter activity Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001651 | Cytochrome_P450, Cytochrome P450: CYP706A | details |
| TreatCFM001730 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase peroxisome matrix targeting signal-1 binding protein import into peroxisome matrix, docking peroxisomal membrane maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) poly(A) RNA binding cytoplasmic translation Peroxisome response to auxin cytosolic large ribosomal subunit | details |
| TreatCFM001735 | Cytochrome_P450, Cytochrome P450: CYP701A GA12 biosynthesis ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid nucleotide-sugar transport gibberellin biosynthetic process cinnamoyl-CoA reductase activity cation binding Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: bHLH single-organism cellular process MAPK signaling pathway - plant coenzyme binding phosphoprotein phosphatase activity | details |
| TreatCFM001958 | Cytochrome_P450, Cytochrome P450: CYP701A ent-kaur-16-en-19-al oxidase activity ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity GA12 biosynthesis Diterpenoid biosynthesis Insulin signaling pathway response to glucose ent-kaurene oxidation to kaurenoic acid gibberellin biosynthetic process defense response to fungus chloroplast outer membrane exocyst response to salt stress exocytosis response to stress response to abscisic acid | details |
| TreatCFM002065 | Peroxisome pseudouridine degradation fatty-acyl-CoA synthase activity jasmonic acid biosynthetic process ribosomal small subunit assembly jasmonic acid biosynthesis Pyrimidine metabolism hydrolase activity, acting on glycosyl bonds cytosolic small ribosomal subunit | details |
| TreatCFM002130 | tRNA (m1A) methyltransferase complex vindoline and vinblastine biosynthesis Stilbenoid, diarylheptanoid and gingerol biosynthesis cation binding 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein-lysine N-methyltransferase activity ATP-dependent DNA helicase activity myricetin 3'-O-methyltransferase activity nucleobase-containing compound metabolic process alkaloid biosynthetic process peptidyl-lysine monomethylation DNA duplex unwinding aromatic compound biosynthetic process tRNA methylation Transcription_related, Transcription regulator: SET MAPK signaling pathway - plant phosphoprotein phosphatase activity protein homodimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |