TreatCFM002130's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
tRNA (m1A) methyltransferase complex | 0.005849767 | GO:0031515 |
vindoline and vinblastine biosynthesis | 0.008658466 | plantCyc |
Stilbenoid, diarylheptanoid and gingerol biosynthesis | 0.012746164 | KEGG pathway |
cation binding | 0.01353093 | GO:0043169 |
11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity | 0.01353093 | GO:0030766 |
protein-lysine N-methyltransferase activity | 0.01353093 | GO:0016279 |
ATP-dependent DNA helicase activity | 0.01353093 | GO:0004003 |
myricetin 3'-O-methyltransferase activity | 0.01353093 | GO:0033799 |
nucleobase-containing compound metabolic process | 0.013921357 | GO:0006139 |
alkaloid biosynthetic process | 0.013921357 | GO:0009821 |
peptidyl-lysine monomethylation | 0.013921357 | GO:0018026 |
DNA duplex unwinding | 0.013921357 | GO:0032508 |
aromatic compound biosynthetic process | 0.013921357 | GO:0019438 |
tRNA methylation | 0.013921357 | GO:0030488 |
Transcription_related, Transcription regulator: SET | 0.018573055 | TF family |
MAPK signaling pathway - plant | 0.029024985 | KEGG pathway |
phosphoprotein phosphatase activity | 0.03375243 | GO:0004721 |
protein homodimerization activity | 0.040449094 | GO:0042803 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T001785 | AT2G45730 (7.00E-136) | eukaryotic initiation factor 3 gamma subunit family protein |
CRO_T004356 | AT5G54160 (8.00E-41) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
CRO_T005576 | AT2G18850 (2.00E-141) | SET domain-containing protein |
CRO_T005974 | AT4G31750 (4.00E-34) | WIN2|HOPW1-1-interacting 2 |
CRO_T016387 | - | - |
CRO_T024206 | AT1G03190 (2.00E-12) | ATXPD|XERODERMA PIGMENTOSUM GROUP D; UVH6|ULTRAVIOLET HYPERSENSITIVE 6 |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM001735 | Cytochrome_P450, Cytochrome P450: CYP701A GA12 biosynthesis ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid nucleotide-sugar transport gibberellin biosynthetic process cinnamoyl-CoA reductase activity cation binding Diterpenoid biosynthesis chloroplast outer membrane Transcription_related, Transcription factor: bHLH single-organism cellular process MAPK signaling pathway - plant coenzyme binding phosphoprotein phosphatase activity | details |
TreatCFM001846 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity protein-lysine N-methyltransferase activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) developmental process involved in reproduction stearate biosynthesis II (bacteria and plants) peptidyl-lysine monomethylation palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: C2H2 | details |
TreatCFM001946 | iron reduction and absorption cellular metabolic process organic substance metabolic process MAPK signaling pathway - plant cation binding cytoplasmic part phosphoprotein phosphatase activity intracellular membrane-bounded organelle | details |
TreatCFM002121 | Amyotrophic lateral sclerosis (ALS) Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I beta-sitosterol UDP-glucosyltransferase activity dipeptidyl-peptidase activity superoxide dismutase activity lipid glycosylation pyrimidine ribonucleotides interconversion seed development removal of superoxide radicals sterol metabolic process serine-type carboxypeptidase activity translational initiation chloroplast RNA transport translation initiation factor activity | details |
TreatCFM002122 | proteolysis serine-type endopeptidase activity gamma-glutamyl-peptidase activity folate polyglutamylation II glutamate removal from folates glutathione peroxidase activity tetrahydrofolylpolyglutamate metabolic process protein-lysine N-methyltransferase activity glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - Caulobacter Folate biosynthesis response to reactive oxygen species Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation glutamine metabolic process regulation of gene expression | details |
TreatCFM002129 | cell cell redox homeostasis microtubule cytoskeleton cytoskeletal part thioredoxin pathway MAPK signaling pathway Stilbenoid, diarylheptanoid and gingerol biosynthesis vindoline and vinblastine biosynthesis 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein disulfide isomerase activity myricetin 3'-O-methyltransferase activity aromatic compound biosynthetic process alkaloid biosynthetic process regulation of cellular process protein disulfide oxidoreductase activity protein homodimerization activity electron carrier activity | details |
TreatCFM002149 | Cell cycle - Caulobacter serine-type endopeptidase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression DNA recombination ATP-dependent helicase activity protein-lysine N-methyltransferase activity RNA degradation | details |
TreatCFM002154 | Cell cycle - Caulobacter serine-type endopeptidase activity ADP binding protein-lysine N-methyltransferase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression Plant-pathogen interaction defense response | details |
TreatCFM002164 | methylated histone binding Cell cycle - Caulobacter MAPK signaling pathway peptidyl-lysine monomethylation response to reactive oxygen species regulation of gene expression protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET | details |
Expression profiles
Show details about module gene expression profiling |