TreatCFM002130's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
tRNA (m1A) methyltransferase complex0.005849767GO:0031515
vindoline and vinblastine biosynthesis0.008658466plantCyc
Stilbenoid, diarylheptanoid and gingerol biosynthesis 0.012746164KEGG pathway
cation binding0.01353093GO:0043169
11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity0.01353093GO:0030766
protein-lysine N-methyltransferase activity0.01353093GO:0016279
ATP-dependent DNA helicase activity0.01353093GO:0004003
myricetin 3'-O-methyltransferase activity0.01353093GO:0033799
nucleobase-containing compound metabolic process0.013921357GO:0006139
alkaloid biosynthetic process0.013921357GO:0009821
peptidyl-lysine monomethylation0.013921357GO:0018026
DNA duplex unwinding0.013921357GO:0032508
aromatic compound biosynthetic process0.013921357GO:0019438
tRNA methylation0.013921357GO:0030488
Transcription_related, Transcription regulator: SET0.018573055TF family
MAPK signaling pathway - plant 0.029024985KEGG pathway
phosphoprotein phosphatase activity0.03375243GO:0004721
protein homodimerization activity0.040449094GO:0042803

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T001785AT2G45730 (7.00E-136)eukaryotic initiation factor 3 gamma subunit family protein
CRO_T004356AT5G54160 (8.00E-41)ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1
CRO_T005576AT2G18850 (2.00E-141)SET domain-containing protein
CRO_T005974AT4G31750 (4.00E-34)WIN2|HOPW1-1-interacting 2
CRO_T016387--
CRO_T024206AT1G03190 (2.00E-12)ATXPD|XERODERMA PIGMENTOSUM GROUP D; UVH6|ULTRAVIOLET HYPERSENSITIVE 6

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TreatCFM001735Cytochrome_P450, Cytochrome P450: CYP701A
GA12 biosynthesis
ent-kaur-16-en-19-ol oxidase activity
ent-kaurene oxidase activity
ent-kaur-16-en-19-al oxidase activity
ent-kaurene oxidation to kaurenoic acid
nucleotide-sugar transport
gibberellin biosynthetic process
cinnamoyl-CoA reductase activity
cation binding
Diterpenoid biosynthesis
chloroplast outer membrane
Transcription_related, Transcription factor: bHLH
single-organism cellular process
MAPK signaling pathway - plant
coenzyme binding
phosphoprotein phosphatase activity
details
TreatCFM001846catalytic complex
intracellular non-membrane-bounded organelle
nuclear lumen
3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
protein-lysine N-methyltransferase activity
fatty acid elongation -- saturated
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
developmental process involved in reproduction
stearate biosynthesis II (bacteria and plants)
peptidyl-lysine monomethylation
palmitate biosynthesis II (bacteria and plants)
Transcription_related, Transcription regulator: PHD
Transcription_related, Transcription regulator: SET
Transcription_related, Transcription factor: C2H2
details
TreatCFM001946iron reduction and absorption
cellular metabolic process
organic substance metabolic process
MAPK signaling pathway - plant
cation binding
cytoplasmic part
phosphoprotein phosphatase activity
intracellular membrane-bounded organelle
details
TreatCFM002121Amyotrophic lateral sclerosis (ALS)
Renin-angiotensin system
S-methyl-5-thio-α-D-ribose 1-phosphate degradation
L-leucine biosynthesis
L-leucine degradation I
beta-sitosterol UDP-glucosyltransferase activity
dipeptidyl-peptidase activity
superoxide dismutase activity
lipid glycosylation
pyrimidine ribonucleotides interconversion
seed development
removal of superoxide radicals
sterol metabolic process
serine-type carboxypeptidase activity
translational initiation
chloroplast
RNA transport
translation initiation factor activity
details
TreatCFM002122proteolysis
serine-type endopeptidase activity
gamma-glutamyl-peptidase activity
folate polyglutamylation II
glutamate removal from folates
glutathione peroxidase activity
tetrahydrofolylpolyglutamate metabolic process
protein-lysine N-methyltransferase activity
glutathione-peroxide redox reactions
reactive oxygen species degradation
Arachidonic acid metabolism
Cell cycle - Caulobacter
Folate biosynthesis
response to reactive oxygen species
Transcription_related, Transcription regulator: PHD
Transcription_related, Transcription regulator: SET
peptidyl-lysine monomethylation
glutamine metabolic process
regulation of gene expression
details
TreatCFM002129cell
cell redox homeostasis
microtubule cytoskeleton
cytoskeletal part
thioredoxin pathway
MAPK signaling pathway
Stilbenoid, diarylheptanoid and gingerol biosynthesis
vindoline and vinblastine biosynthesis
11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity
protein disulfide isomerase activity
myricetin 3'-O-methyltransferase activity
aromatic compound biosynthetic process
alkaloid biosynthetic process
regulation of cellular process
protein disulfide oxidoreductase activity
protein homodimerization activity
electron carrier activity
details
TreatCFM002149Cell cycle - Caulobacter
serine-type endopeptidase activity
proteolysis
response to reactive oxygen species
Transcription_related, Transcription regulator: SET
peptidyl-lysine monomethylation
regulation of gene expression
DNA recombination
ATP-dependent helicase activity
protein-lysine N-methyltransferase activity
RNA degradation
details
TreatCFM002154Cell cycle - Caulobacter
serine-type endopeptidase activity
ADP binding
protein-lysine N-methyltransferase activity
proteolysis
response to reactive oxygen species
Transcription_related, Transcription regulator: SET
peptidyl-lysine monomethylation
regulation of gene expression
Plant-pathogen interaction
defense response
details
TreatCFM002164methylated histone binding
Cell cycle - Caulobacter
MAPK signaling pathway
peptidyl-lysine monomethylation
response to reactive oxygen species
regulation of gene expression
protein-lysine N-methyltransferase activity
Transcription_related, Transcription regulator: SET
details

Expression profiles


Show details about module gene expression profiling
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