TreatCFM001518's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP81K | 0.002954864 | CYP450 family |
| Transcription_related, Transcription factor: STAT | 0.002954864 | TF family |
| UDP-D-galactose biosynthesis | 0.006514994 | plantCyc |
| UDP-L-arabinose biosynthesis I (from UDP-xylose) | 0.006514994 | plantCyc |
| Cytochrome_P450, Cytochrome P450: CYP81D | 0.006889591 | CYP450 family |
| D-galactose degradation III | 0.008683451 | plantCyc |
| stachyose degradation | 0.011451996 | plantCyc |
| UDP-sugars interconversion | 0.011451996 | plantCyc |
| sesamin biosynthesis | 0.013438481 | plantCyc |
| Galactose metabolism | 0.017514326 | KEGG pathway |
| box C/D snoRNP complex | 0.018239289 | GO:0031428 |
| indole glucosinolate metabolic process | 0.019165985 | GO:0042343 |
| defense response to other organism | 0.019165985 | GO:0098542 |
| rRNA modification | 0.019165985 | GO:0000154 |
| galactose metabolic process | 0.019165985 | GO:0006012 |
| Ribosome biogenesis in eukaryotes | 0.022469848 | KEGG pathway |
| organic substance metabolic process | 0.02252657 | GO:0071704 |
| cellular metabolic process | 0.02252657 | GO:0044237 |
| UDP-glucose 4-epimerase activity | 0.02697784 | GO:0003978 |
| signal transducer activity | 0.030793114 | GO:0004871 |
| snoRNA binding | 0.030793114 | GO:0030515 |
| secondary metabolite biosynthetic process | 0.045444767 | GO:0044550 |
| signal transduction | 0.045444767 | GO:0007165 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003377 | AT3G05060 (3.00E-106) | NOP56-like pre RNA processing ribonucleoprotein |
| CRO_T004325 | AT4G37320 (1.00E-115) | CYP81D5|cytochrome P450, family 81, subfamily D, polypeptide 5 |
| CRO_T009808 | AT1G12780 (1.00E-166) | ATUGE1|A. THALIANA UDP-GLC 4-EPIMERASE 1; UGE1|UDP-D-glucose/UDP-D-galactose 4-epimerase 1 |
| CRO_T017063 | AT1G48420 (4.00E-89) | ACD1|1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; ATACD1|A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1; D-CDES|D-cysteine desulfhydrase |
| CRO_T025684 | - | - |
| CRO_T031699 | AT1G78540 (1.00E-159) | ATSHB|SH2 DOMAIN PROTEIN B; STATLB|STAT-TYPE LINKER-SH2 DOMAIN FACTOR B |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001476 | phosphatidylinositol metabolic process rRNA modification 3-phosphoinositide biosynthesis sesaminol glucoside biosynthesis box C/D snoRNP complex mitochondrial large ribosomal subunit small-subunit processome | details |
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001561 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I malate transmembrane transport malate transmembrane transporter activity histone acetyltransferase activity histone acetylation Glycerophospholipid metabolism lyase activity plant-type vacuole membrane lipid metabolic process | details |
| TreatCFM001571 | rRNA modification box C/D snoRNP complex snoRNA binding Ribosome biogenesis in eukaryotes small-subunit processome UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) D-galactose degradation III UDP-glucose 4-epimerase activity Galactose metabolism stachyose degradation UDP-sugars interconversion galactose metabolic process organic substance metabolic process cellular metabolic process transmembrane transporter activity Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001688 | rRNA modification box C/D snoRNP complex snoRNA binding small-subunit processome Ribosome biogenesis in eukaryotes phosphatidylethanolamine biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) histone acetylation Glycerophospholipid metabolism histone acetyltransferase activity MAPK signaling pathway - plant | details |
| TreatCFM001946 | iron reduction and absorption cellular metabolic process organic substance metabolic process MAPK signaling pathway - plant cation binding cytoplasmic part phosphoprotein phosphatase activity intracellular membrane-bounded organelle | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002010 | Transcription_related, Transcription factor: ERF | details |
| TreatCFM002081 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |