TreatCFM000156's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| plastid organization | 0.002686107 | GO:0009657 |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.012225074 | cazy family |
| isoflavonoid biosynthesis II | 0.032113563 | plantCyc |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.03590463 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003021 | AT1G28530 (2.00E-84) | unknown protein |
| CRO_T003153 | AT4G20840 (4.00E-76) | FAD-binding Berberine family protein |
| CRO_T004058 | - | - |
| CRO_T004986 | - | - |
| CRO_T009657 | - | - |
| CRO_T009713 | - | - |
| CRO_T011369 | - | - |
| CRO_T015915 | AT2G36835 (8.00E-14) | unknown protein |
| CRO_T015980 | - | - |
| CRO_T016010 | - | - |
| CRO_T019099 | AT5G16080 (2.00E-26) | AtCXE17|carboxyesterase 17 |
| CRO_T020269 | - | - |
| CRO_T021979 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000029 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) regulation of RNA metabolic process | details |
| TreatCFM000035 | details | |
| TreatCFM000080 | negative regulation of protein kinase activity protein kinase inhibitor activity double-stranded RNA binding protein kinase binding | details |
| TreatCFM000089 | ABC transporters photosystem II reaction center | details |
| TreatCFM000266 | outer membrane | details |
| TreatCFM000371 | response to biotic stimulus defense response redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 L-aspartate biosynthesis L-aspartate degradation I superpathway of L-isoleucine biosynthesis I superpathway of L-threonine biosynthesis UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis superpathway of aspartate and asparagine biosynthesis UDP-sugars interconversion regulation of protein serine/threonine phosphatase activity acetaldehyde biosynthesis I pyruvate fermentation to ethanol II alcohol dehydrogenase (NAD) activity UDP-glucose 6-dehydrogenase activity receptor activity L-aspartate:2-oxoglutarate aminotransferase activity S-(hydroxymethyl)glutathione dehydrogenase activity protein phosphatase inhibitor activity abscisic acid binding | details |
| TreatCFM000440 | isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity transmembrane transport | details |
| TreatCFM000587 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase cell surface receptor signaling pathway | details |
| TreatCFM000776 | plastid organization seed maturation response to cold response to salt stress response to water deprivation response to abscisic acid | details |
| TreatCFM000874 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 cell surface receptor signaling pathway | details |
| TreatCFM001177 | response to chitin protein phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001220 | DNA methylation on cytosine within a CHH sequence cellular response to heat C-5 methylation of cytosine polyvinyl alcohol degradation N-methyltransferase activity DNA (cytosine-5-)-methyltransferase activity 16-methoxy-2,3-dihydro-3-hydroxytabersonine N-methyltransferase activity vitamin E biosynthetic process 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity Cysteine and methionine metabolism Ubiquinone and other terpenoid-quinone biosynthesis ajmaline and sarpagine biosynthesis vindoline and vinblastine biosynthesis chromatin binding | details |
| TreatCFM001422 | Transcription_related, Transcription factor: WRKY plastid organization Glutathione metabolism Plant-pathogen interaction cellular metabolic process multicellular organism development | details |
| TreatCFM001966 | transcription from plastid promoter plastid organization barrier septum assembly Glycerolipid metabolism chloroplast nucleoid CDP-diacylglycerol biosynthesis I sucrose degradation III (sucrose invertase) chloroplast part diacylglycerol and triacylglycerol biosynthesis chloroplast organization phosphotransferase activity, alcohol group as acceptor | details |
| TreatCFM002124 | retinal dehydrogenase activity coniferyl-aldehyde dehydrogenase activity benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I ferulate and sinapate biosynthesis sucrose degradation III (sucrose invertase) chloroplast nucleoid phosphotransferase activity, alcohol group as acceptor MAPK signaling pathway plastid organization transcription from plastid promoter phenylpropanoid biosynthetic process chloroplast organization Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |