TreatCFM001977's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway | 0.003541648 | KEGG pathway |
| spliceosomal complex assembly | 0.007440758 | GO:0000245 |
| U5 snRNP | 0.020902102 | GO:0005682 |
| U4/U6 x U5 tri-snRNP complex | 0.020902102 | GO:0046540 |
| spliceosomal complex | 0.022496655 | GO:0005681 |
| protein dephosphorylation | 0.023257748 | GO:0006470 |
| phosphoprotein phosphatase activity | 0.023862007 | GO:0004721 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003583 | AT1G17100 (6.00E-69) | HBP1|haem-binding protein 1 |
| CRO_T005585 | - | - |
| CRO_T015399 | AT3G24730 (2.00E-69) | mRNA splicing factor, thioredoxin-like U5 snRNP |
| CRO_T016757 | AT2G42975 (5.00E-39) | unknown protein |
| CRO_T025848 | AT5G02120 (5.00E-28) | OHP|one helix protein; PDE335|PIGMENT DEFECTIVE 335 |
| CRO_T028435 | AT4G02370 (3.00E-22) | Protein of unknown function, DUF538 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000514 | structural molecule activity phosphatidylinositol binding membrane coat vesicle-mediated transport signal transduction intracellular protein transport | details |
| TreatCFM001575 | pentose phosphate pathway (oxidative branch) I thiamine diphosphate biosynthesis IV (eukaryotes) 6-phosphogluconolactonase activity pentose-phosphate shunt iron-sulfur cluster assembly microtubule-based movement iron-sulfur cluster binding microtubule motor activity microtubule binding Carbon metabolism | details |
| TreatCFM001679 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity Glycolysis / Gluconeogenesis cellular aldehyde metabolic process reciprocal meiotic recombination aldehyde dehydrogenase (NAD) activity synaptonemal complex S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001699 | histone lysine methylation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM002052 | phosphogluconate dehydrogenase (decarboxylating) activity organic cyclic compound binding S-adenosylmethionine-dependent methyltransferase activity helicase activity NAD binding heterocyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |