TreatCFM002052's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphogluconate dehydrogenase (decarboxylating) activity | 0.021276655 | GO:0004616 |
| organic cyclic compound binding | 0.033260347 | GO:0097159 |
| S-adenosylmethionine-dependent methyltransferase activity | 0.033260347 | GO:0008757 |
| helicase activity | 0.033260347 | GO:0004386 |
| NAD binding | 0.033260347 | GO:0051287 |
| heterocyclic compound binding | 0.033260347 | GO:1901363 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000182 | AT1G15930 (2.00E-38) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T003279 | AT2G38710 (4.00E-96) | AMMECR1 family |
| CRO_T004127 | AT1G06240 (8.00E-132) | Protein of unknown function DUF455 |
| CRO_T005805 | AT5G27680 (0) | RECQSIM|RECQ helicase SIM |
| CRO_T011464 | AT1G17650 (3.00E-31) | GLYR2|glyoxylate reductase 2 |
| CRO_T028435 | AT4G02370 (3.00E-22) | Protein of unknown function, DUF538 |
| CRO_T029956 | AT5G54610 (8.00E-19) | ANK|ankyrin; BDA1|bian da 2 (becoming big in Chinese) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000002 | phosphogluconate dehydrogenase (decarboxylating) activity NAD binding | details |
| TreatCFM000302 | phosphogluconate dehydrogenase (decarboxylating) activity chromosome, centromeric region mitotic nuclear division NAD binding | details |
| TreatCFM000309 | actin filament depolymerization Regulation of actin cytoskeleton actin cytoskeleton endosome vacuolar membrane cytosolic large ribosomal subunit trans-Golgi network S-adenosylmethionine-dependent methyltransferase activity actin binding serine-type endopeptidase activity | details |
| TreatCFM001575 | pentose phosphate pathway (oxidative branch) I thiamine diphosphate biosynthesis IV (eukaryotes) 6-phosphogluconolactonase activity pentose-phosphate shunt iron-sulfur cluster assembly microtubule-based movement iron-sulfur cluster binding microtubule motor activity microtubule binding Carbon metabolism | details |
| TreatCFM001699 | histone lysine methylation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001756 | regulation of fatty acid biosynthetic process regulation of phosphorylation regulation of nitrogen utilization anthocyanin-containing compound biosynthetic process ajmaline and sarpagine biosynthesis acetylglutamate kinase regulator activity cellular protein metabolic process regulation of catalytic activity | details |
| TreatCFM001977 | MAPK signaling pathway spliceosomal complex assembly U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex protein dephosphorylation phosphoprotein phosphatase activity | details |
| TreatCFM002040 | mRNA modification copper ion export Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family MAPK signaling pathway - plant nucleic acid phosphodiester bond hydrolysis copper-exporting ATPase activity ribosomal large subunit binding endonuclease activity ribosome binding | details |
Expression profiles
 Show details about module gene expression profiling |