TreatCFM002003's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chloroplast RNA modification | 0.003036347 | GO:1900865 |
| ubiquinone-6 biosynthetic process | 0.003036347 | GO:1901006 |
| aerobic respiration III (alternative oxidase pathway) | 0.007072836 | plantCyc |
| alternative oxidase activity | 0.014356529 | GO:0009916 |
| nucleic acid binding | 0.014356529 | GO:0003676 |
| NADH dehydrogenase activity | 0.014356529 | GO:0003954 |
| RNA secondary structure unwinding | 0.027586936 | GO:0010501 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001395 | AT5G10730 (8.00E-55) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T005345 | AT1G68990 (0) | MGP3|male gametophyte defective 3 |
| CRO_T012784 | AT3G22370 (3.00E-81) | AOX1A|alternative oxidase 1A; HSR3|hyper-sensitivity-related 3 |
| CRO_T014691 | AT4G37380 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T017555 | AT5G08620 (0) | ATRH25|RNA HELICASE 25; STRS2|STRESS RESPONSE SUPPRESSOR 2 |
| CRO_T031975 | AT4G09730 (4.00E-82) | RH39|RH39 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001210 | protein import into chloroplast stroma protein refolding RNA secondary structure unwinding chloroplast organization | details |
| TreatCFM001421 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate oxidase activity L-aspartate:fumarate oxidoreductase activity transcription, DNA-templated NAD biosynthetic process Alanine, aspartate and glutamate metabolism ribonucleoside binding DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 90S preribosome Purine metabolism | details |
| TreatCFM001696 | DNA-directed RNA polymerase activity NAD biosynthesis I (from aspartate) L-aspartate:fumarate oxidoreductase activity L-aspartate oxidase activity tetrapyrrole binding negative regulation of chlorophyll biosynthetic process NAD biosynthetic process red or far-red light signaling pathway chloroplast-nucleus signaling pathway transcription, DNA-templated ribonucleoside binding Alanine, aspartate and glutamate metabolism MAPK signaling pathway maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) DNA binding phosphoprotein phosphatase activity 90S preribosome integral component of endoplasmic reticulum membrane nuclear envelope | details |
| TreatCFM001773 | negative regulation of cellular process ubiquinone-6 biosynthetic process membrane fusion Phenylpropanoid biosynthesis NADH dehydrogenase activity cinnamoyl-CoA reductase activity Basal transcription factors adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII SNAP receptor activity coenzyme binding | details |
| TreatCFM002004 | oxidation-reduction process ubiquinone-6 biosynthetic process alternative oxidase activity cinnamoyl-CoA reductase activity NADH dehydrogenase activity aerobic respiration III (alternative oxidase pathway) Phenylpropanoid biosynthesis coenzyme binding embryo development ending in seed dormancy protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |