TreatCFM001596's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll cycle | 0.001595037 | plantCyc |
| chlorophyll synthetase activity | 0.001950499 | GO:0046408 |
| Porphyrin and chlorophyll metabolism | 0.007777821 | KEGG pathway |
| chlorophyll biosynthetic process | 0.007971652 | GO:0015995 |
| clathrin vesicle coat | 0.010424761 | GO:0030125 |
| vesicle-mediated transport | 0.019051569 | GO:0016192 |
| transferase activity, transferring glycosyl groups | 0.042639204 | GO:0016757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002856 | AT2G40060 (2.00E-18) | CLC2|clathrin light chain 2 |
| CRO_T003051 | AT5G66090 (7.00E-63) | unknown protein |
| CRO_T009716 | - | - |
| CRO_T020217 | AT3G51820 (4.00E-164) | PDE325|PIGMENT DEFECTIVE 325 |
| CRO_T030823 | - | - |
| CRO_T032121 | AT4G33600 (6.00E-158) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000064 | clathrin vesicle coat secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: NAC | details |
| TreatCFM000204 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity dimethylallyltranstransferase activity glycogen biosynthetic process starch biosynthetic process isoprenoid biosynthetic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) chloroplast Terpenoid backbone biosynthesis small-subunit processome Starch and sucrose metabolism nucleolus | details |
| TreatCFM000413 | Mitophagy - animal clathrin vesicle coat Fatty acid metabolism Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II vesicle-mediated transport | details |
| TreatCFM001020 | long-chain fatty acid-CoA ligase activity FAD binding clathrin vesicle coat Fatty acid metabolism Transcription_related, Transcription factor: HB long-chain fatty acid metabolic process cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001578 | carboxypeptidase activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) protein binding | details |
| TreatCFM001888 | 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport Transcription_related, Transcription regulator: TRAF integral component of Golgi membrane clathrin vesicle coat integral component of endoplasmic reticulum membrane ATP-dependent peptidase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport Plant hormone signal transduction vesicle-mediated transport endomembrane system | details |
| TreatCFM001901 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling Mitophagy - animal clathrin vesicle coat delta DNA polymerase complex nucleotide-excision repair red, far-red light phototransduction 3'-5'-exodeoxyribonuclease activity Phenylpropanoid biosynthesis cullin-RING ubiquitin ligase complex DNA biosynthetic process DNA-directed DNA polymerase activity damaged DNA binding coenzyme binding proteasome-mediated ubiquitin-dependent protein catabolic process nucleic acid phosphodiester bond hydrolysis vesicle-mediated transport | details |
| TreatCFM002006 | chloroplast thylakoid chlorophyll cycle chlorophyll synthetase activity Golgi medial cisterna chloroplastic endopeptidase Clp complex cis-Golgi network Arp2/3 protein complex actin filament polymerization DNA-templated transcription, termination regulation of vesicle targeting, to, from or within Golgi Cell cycle - Caulobacter Porphyrin and chlorophyll metabolism SNARE interactions in vesicular transport Arp2/3 complex-mediated actin nucleation SNARE binding actin binding SNAP receptor activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity intra-Golgi vesicle-mediated transport chlorophyll biosynthetic process glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress SNARE complex cytoplasm vesicle fusion ER to Golgi vesicle-mediated transport Endocytosis protein transport Golgi membrane serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |