TreatCFM002023's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| N-Glycan biosynthesis | 0.000107901 | KEGG pathway |
| carbohydrate binding | 0.0037104 | GO:0030246 |
| thiol oxidase activity | 0.004402042 | GO:0016972 |
| glucan 1,3-alpha-glucosidase activity | 0.004402042 | GO:0033919 |
| alpha-1,4-glucosidase activity | 0.0066016 | GO:0004558 |
| maltose alpha-glucosidase activity | 0.0066016 | GO:0032450 |
| potassium ion binding | 0.012252869 | GO:0030955 |
| pyruvate kinase activity | 0.012252869 | GO:0004743 |
| glycolysis I (from glucose 6-phosphate) | 0.017164606 | plantCyc |
| glycolysis IV (plant cytosol) | 0.017164606 | plantCyc |
| Rubisco shunt | 0.017164606 | plantCyc |
| maltose metabolic process | 0.019272734 | GO:0000023 |
| glycolytic process | 0.029223216 | GO:0006096 |
| response to water deprivation | 0.029223216 | GO:0009414 |
| hyperosmotic salinity response | 0.029223216 | GO:0042538 |
| response to cold | 0.029223216 | GO:0009409 |
| identical protein binding | 0.035384116 | GO:0042802 |
| response to abscisic acid | 0.04220936 | GO:0009737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004154 | AT5G63840 (5.00E-97) | PSL5|PRIORITY IN SWEET LIFE 5; RSW3|RADIAL SWELLING 3 |
| CRO_T007308 | AT1G49880 (7.00E-23) | EMB3106|EMBRYO DEFECTIVE 3106; Erv1|Erv1 |
| CRO_T010006 | AT3G22960 (4.00E-108) | PKP1|PLASTIDIAL PYRUVATE KINASE 1 |
| CRO_T012905 | AT5G53280 (6.00E-53) | PDV1|PLASTID DIVISION1 |
| CRO_T020659 | AT5G50720 (9.00E-21) | ATHVA22E|HVA22 HOMOLOGUE E |
| CRO_T033335 | AT5G63840 (3.00E-111) | PSL5|PRIORITY IN SWEET LIFE 5; RSW3|RADIAL SWELLING 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000591 | Carbon metabolism Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I posttranscriptional regulation of gene expression heat acclimation glycolytic process ascorbate glutathione cycle L-ascorbate degradation V L-valine degradation I Rubisco shunt glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) pyruvate kinase activity potassium ion binding | details |
| TreatCFM001393 | carbohydrate binding glucan 1,3-alpha-glucosidase activity aldose 1-epimerase activity L-amino acid transmembrane transporter activity solute:proton antiporter activity negative regulation of biological process L-alpha-amino acid transmembrane transport hexose metabolic process L-amino acid transport MicroRNAs in cancer early endosome membrane potassium ion transport Glycolysis / Gluconeogenesis N-Glycan biosynthesis SNARE binding SNAP receptor activity cellular macromolecule metabolic process antiporter activity primary metabolic process exocytosis vesicle fusion | details |
| TreatCFM001394 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I negative regulation of biological process L-alpha-amino acid transmembrane transport L-amino acid transport cellular aldehyde metabolic process mitochondrion organization integral component of mitochondrial outer membrane glucan 1,3-alpha-glucosidase activity aldehyde dehydrogenase [NAD(P)+] activity 3-chloroallyl aldehyde dehydrogenase activity MicroRNAs in cancer Mitophagy - animal L-amino acid transmembrane transporter activity Glycolysis / Gluconeogenesis cellular macromolecule metabolic process aldehyde dehydrogenase (NAD) activity N-Glycan biosynthesis primary metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box small GTPase mediated signal transduction | details |
| TreatCFM001442 | Transcription_related, Transcription regulator: PHD hyperosmotic salinity response response to water deprivation response to cold response to abscisic acid | details |
| TreatCFM001715 | γ-glutamyl cycle nuclear export signal receptor activity glucan 1,3-alpha-glucosidase activity protein export from nucleus protein import into nucleus ribosomal large subunit assembly Ran GTPase binding N-Glycan biosynthesis | details |
| TreatCFM001854 | glucan 1,3-alpha-glucosidase activity thiol oxidase activity adenosine ribonucleotides de novo biosynthesis posttranscriptional regulation of gene expression heat acclimation mitochondrion proton-transporting ATP synthase complex, catalytic core F(1) N-Glycan biosynthesis response to cold hyperosmotic salinity response response to water deprivation ATP synthesis coupled proton transport ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism identical protein binding response to abscisic acid | details |
| TreatCFM001874 | thioredoxin pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: AUX/IAA Apelin signaling pathway response to sucrose cellular response to nitrogen levels response to cold Plant hormone signal transduction | details |
| TreatCFM002027 | γ-glutamyl cycle glucan 1,3-alpha-glucosidase activity alkane biosynthetic process cuticle hydrocarbon biosynthetic process N-Glycan biosynthesis cell periphery carbohydrate binding cytoplasmic part single-organism process | details |
| TreatCFM002136 | Ubiquitin_Proteasome_system, DUB: USP thiol oxidase activity Ras signaling pathway maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular protein metabolic process cytoplasmic translation cysteine-type peptidase activity poly(A) RNA binding metal ion binding identical protein binding small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |